Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_20170 Physcomitrium patens HOM05D001301 ORTHO05D309804 1.2e-155 553.1 289 100.0
Pp3c13_20171 Physcomitrium patens HOM05D001301 ORTHO05D317681 1.2e-155 553.1 289 100.0
C03p26650 Brassica napus HOM05D001301 ORTHO05D001169 2.1e-09 67.4 200 31.5
arahy.Tifrunner.gnm1.ann1.DS2FEI Arachis hypogaea HOM05D001301 ORTHO05D001169 4.6e-09 66.2 229 30.1
arahy.Tifrunner.gnm1.ann1.P3SEJU Arachis hypogaea HOM05D001301 ORTHO05D001169 6.0e-09 65.9 229 30.1
BcaC01g05441 Brassica carinata HOM05D001301 ORTHO05D001169 1.3e-08 64.7 204 31.4
BolC3t15050H Brassica oleracea HOM05D001301 ORTHO05D001169 1.3e-08 64.7 204 31.4
BcaB01g03593 Brassica carinata HOM05D001301 ORTHO05D001169 2.3e-08 63.9 207 31.9
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 3.0e-08 63.5 201 32.3
Duzib235G0960 Durio zibethinus HOM05D001301 ORTHO05D001169 3.0e-08 63.5 189 32.3
BcaNung05462 Brassica carinata HOM05D001301 ORTHO05D001169 3.9e-08 63.2 187 32.6
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 3.9e-08 63.2 224 32.1
A03p22500 Brassica napus HOM05D001301 ORTHO05D001169 5.1e-08 62.8 204 31.4
Dinv40536 Davidia involucrata HOM05D001301 ORTHO05D001169 5.1e-08 62.8 227 28.6
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 1.1e-07 61.6 201 31.3
CANSAT78G1400 Cannabis sativa HOM05D001301 ORTHO05D001169 1.1e-07 61.6 192 30.2
Ca_17517_v3 Cicer arietinum L. HOM05D001301 ORTHO05D001169 1.1e-07 61.6 166 30.1
COL.COLO4_31505 Corchorus olitorius HOM05D001301 ORTHO05D001169 1.1e-07 61.6 186 31.7
DCAR_024912 Daucus carota HOM05D001301 ORTHO05D001169 1.1e-07 61.6 234 27.8
Duzib192G0584 Durio zibethinus HOM05D001301 ORTHO05D001169 1.1e-07 61.6 166 31.9
Medtr8g098515 Medicago truncatula HOM05D001301 ORTHO05D001169 1.1e-07 61.6 227 27.8
Nn1g06611 Nelumbo nucifera HOM05D001301 ORTHO05D001169 1.1e-07 61.6 166 33.7
TPR.G12913 Trifolium pratense HOM05D001301 ORTHO05D001169 1.1e-07 61.6 159 30.2
C09p65730 Brassica napus HOM05D001301 ORTHO05D001169 1.5e-07 61.2 173 33.5
FAN25G3473 Fragaria x ananassa HOM05D001301 ORTHO05D001169 1.5e-07 61.2 229 31.4
Medtr4g088980 Medicago truncatula HOM05D001301 ORTHO05D001169 1.5e-07 61.2 192 30.7
Sp4g22350 Schrenkiella parvula HOM05D001301 ORTHO05D001169 1.5e-07 61.2 204 31.4
VMungo0251G3090 Vigna mungo HOM05D001301 ORTHO05D001169 1.5e-07 61.2 179 29.1
Ca_00320_v3 Cicer arietinum L. HOM05D001301 ORTHO05D001169 1.9e-07 60.8 179 31.3
Duzib160G0836 Durio zibethinus HOM05D001301 ORTHO05D001169 1.9e-07 60.8 179 31.3
FvH4_3g04840 Fragaria vesca HOM05D001301 ORTHO05D001169 1.9e-07 60.8 227 31.3
Lj4g0024126 Lotus japonicus HOM05D001301 ORTHO05D001169 1.9e-07 60.8 232 28.0
Aa31LG10G10830 Aethionema arabicum HOM05D001301 ORTHO05D001169 2.5e-07 60.5 203 31.0
Medtr2g013220 Medicago truncatula HOM05D001301 ORTHO05D001169 2.5e-07 60.5 195 29.7
THA.LOC104810338 Tarenaya hassleriana HOM05D001301 ORTHO05D001169 2.5e-07 60.5 170 31.8
TAR624G1045 Trochodendron aralioides HOM05D001301 ORTHO05D001169 2.5e-07 60.5 249 27.3
FAN16G1573 Fragaria x ananassa HOM05D001301 ORTHO05D001169 3.3e-07 60.1 229 31.9
FAN21G0622 Fragaria x ananassa HOM05D001301 ORTHO05D001169 3.3e-07 60.1 229 31.0
Glyma.07G195000 Glycine max HOM05D001301 ORTHO05D001169 3.3e-07 60.1 221 28.1
Manes.08G091200 Manihot esculenta HOM05D001301 ORTHO05D001169 3.3e-07 60.1 172 30.2
Oeu014701.1 Olea europaea HOM05D001301 ORTHO05D001169 3.3e-07 60.1 199 28.6
Oeu038215.1 Olea europaea HOM05D001301 ORTHO05D001169 3.3e-07 60.1 181 29.8
PGR031G2913 Punica granatum HOM05D001301 ORTHO05D001169 3.3e-07 60.1 172 33.7
BcaB02g08598 Brassica carinata HOM05D001301 ORTHO05D001169 4.3e-07 59.7 176 29.5
BcaB06g29125 Brassica carinata HOM05D001301 ORTHO05D001169 4.3e-07 59.7 187 32.1
BcaC04g19258 Brassica carinata HOM05D001301 ORTHO05D001169 4.3e-07 59.7 170 32.4
BolC9t59396H Brassica oleracea HOM05D001301 ORTHO05D001169 4.3e-07 59.7 170 32.4
Lalb_Chr05g0218381 Lupinus albus HOM05D001301 ORTHO05D001169 4.3e-07 59.7 246 28.0
Mapoly0075s0069 Marchantia polymorpha HOM05D001301 ORTHO05D001169 4.3e-07 59.7 229 28.8
Potri.016G114700 Populus trichocarpa HOM05D001301 ORTHO05D001169 4.3e-07 59.7 192 31.2
PGR042G0790 Punica granatum HOM05D001301 ORTHO05D001169 4.3e-07 59.7 201 28.4
TPR.G36811 Trifolium pratense HOM05D001301 ORTHO05D001169 4.3e-07 59.7 179 30.2
AT3G51890 Arabidopsis thaliana HOM05D001301 ORTHO05D001169 5.6e-07 59.3 183 31.1
arahy.Tifrunner.gnm1.ann1.7I08U9 Arachis hypogaea HOM05D001301 ORTHO05D001169 5.6e-07 59.3 176 30.7
MSTRG.14682 Avicennia marina HOM05D001301 ORTHO05D001169 5.6e-07 59.3 198 30.3
CANSAT35G1798 Cannabis sativa HOM05D001301 ORTHO05D001169 5.6e-07 59.3 166 31.3
CARHR135000 Cardamine hirsuta HOM05D001301 ORTHO05D001169 5.6e-07 59.3 204 31.9
CARHR161520 Cardamine hirsuta HOM05D001301 ORTHO05D001169 5.6e-07 59.3 164 31.7
CiPaw.04G124900 Carya illinoinensis HOM05D001301 ORTHO05D001169 5.6e-07 59.3 193 30.1
Gohir.A10G024000 Gossypium hirsutum HOM05D001301 ORTHO05D001169 5.6e-07 59.3 188 31.4
Lj1A1207G80 Lonicera japonica HOM05D001301 ORTHO05D001169 5.6e-07 59.3 179 29.6
Phvul.010G002800 Phaseolus vulgaris HOM05D001301 ORTHO05D001169 5.6e-07 59.3 194 29.9
TPR.G11985 Trifolium pratense HOM05D001301 ORTHO05D001169 5.6e-07 59.3 192 30.7
Aqoxy1G02555 Aquilegia oxysepala HOM05D001301 ORTHO05D001169 7.3e-07 58.9 196 30.1
BolC4t28278H Brassica oleracea HOM05D001301 ORTHO05D001169 7.3e-07 58.9 212 28.8
CiPaw.03G175200 Carya illinoinensis HOM05D001301 ORTHO05D001169 7.3e-07 58.9 190 29.5
Thhalv10017117m.g Eutrema salsugineum HOM05D001301 ORTHO05D001169 7.3e-07 58.9 204 30.9
FAN11G1172 Fragaria x ananassa HOM05D001301 ORTHO05D001169 7.3e-07 58.9 227 30.8
Gohir.A03G157500 Gossypium hirsutum HOM05D001301 ORTHO05D001169 7.3e-07 58.9 283 26.9
Gorai.005G202300 Gossypium raimondii HOM05D001301 ORTHO05D001169 7.3e-07 58.9 283 27.2
Manes.16G025400 Manihot esculenta HOM05D001301 ORTHO05D001169 7.3e-07 58.9 179 30.7
Phvul.002G227200 Phaseolus vulgaris HOM05D001301 ORTHO05D001169 7.3e-07 58.9 166 28.9
Prupe.4G043600 Prunus persica HOM05D001301 ORTHO05D001169 7.3e-07 58.9 217 28.6
SHI10431 Sapria himalayana HOM05D001301 ORTHO05D001169 7.3e-07 58.9 174 30.5
Sed0006381 Sechium edule HOM05D001301 ORTHO05D001169 7.3e-07 58.9 179 27.9
Sopen02g023390 Solanum pennellii HOM05D001301 ORTHO05D001169 7.3e-07 58.9 179 30.2
ATR0618G128 Amborella trichopoda HOM05D001301 ORTHO05D001169 9.6e-07 58.5 217 29.5
BcaB02g09058 Brassica carinata HOM05D001301 ORTHO05D001169 9.6e-07 58.5 201 30.8
C04p67750 Brassica napus HOM05D001301 ORTHO05D001169 9.6e-07 58.5 207 29.0
CSS0039707 Camellia sinensis var. sinensis HOM05D001301 ORTHO05D001169 9.6e-07 58.5 179 30.2
Glyma.12G203500 Glycine max HOM05D001301 ORTHO05D001169 9.6e-07 58.5 168 28.0
Mapoly0096s0021 Marchantia polymorpha HOM05D001301 ORTHO05D254073 9.6e-07 58.5 193 30.1
Psat1g206000 Pisum sativum HOM05D001301 ORTHO05D001169 9.6e-07 58.5 166 31.3
Psat7g112920 Pisum sativum HOM05D001301 ORTHO05D001169 9.6e-07 58.5 180 31.1
Ah.09g235720 Amaranthus hybridus HOM05D001301 ORTHO05D001169 1.3e-06 58.2 197 27.4
BcaB06g29122 Brassica carinata HOM05D001301 ORTHO05D001169 1.3e-06 58.2 187 32.1
Cpa.g.sc27.70 Carica papaya HOM05D001301 ORTHO05D001169 1.3e-06 58.2 181 30.4
MELO3C013605.2 Cucumis melo HOM05D001301 ORTHO05D001169 1.3e-06 58.2 179 28.5
Hund23701 Selenicereus undatus HOM05D001301 ORTHO05D001169 1.3e-06 58.2 181 28.2
BcaC02g09295 Brassica carinata HOM05D001301 ORTHO05D001169 1.6e-06 57.8 176 29.0
CSS0031465 Camellia sinensis var. sinensis HOM05D001301 ORTHO05D001169 1.6e-06 57.8 166 32.5
MELO3C007298.2 Cucumis melo HOM05D001301 ORTHO05D001169 1.6e-06 57.8 172 31.4
CsaV3_6G050000 Cucumis sativus L. HOM05D001301 ORTHO05D001169 1.6e-06 57.8 172 31.4
Glyma.15G072100 Glycine max HOM05D001301 ORTHO05D001169 1.6e-06 57.8 179 29.1
Gohir.D10G024700 Gossypium hirsutum HOM05D001301 ORTHO05D001169 1.6e-06 57.8 188 30.3
Lj8A113T50 Lonicera japonica HOM05D001301 ORTHO05D001169 1.6e-06 57.8 181 26.5
MD17G1243300 Malus domestica HOM05D001301 ORTHO05D001169 1.6e-06 57.8 171 31.0
Peaxi162Scf00379g00515 Petunia axillaris HOM05D001301 ORTHO05D001169 1.6e-06 57.8 179 29.1
SalBow8G2424 Salvia bowleyana HOM05D001301 ORTHO05D001169 1.6e-06 57.8 179 29.1
PGSC0003DMG400022381 Solanum tuberosum HOM05D001301 ORTHO05D001169 1.6e-06 57.8 179 30.2
SGA_v2.0_scaffold114G31962 Striga asiatica HOM05D001301 ORTHO05D001169 1.6e-06 57.8 166 30.7
THA.LOC104810085 Tarenaya hassleriana HOM05D001301 ORTHO05D001169 1.6e-06 57.8 170 31.8
VMungo0540G2516 Vigna mungo HOM05D001301 ORTHO05D001169 1.6e-06 57.8 179 30.2
AT2G40060 Arabidopsis thaliana HOM05D001301 ORTHO05D001169 2.1e-06 57.4 200 30.0
BcaC02g07347 Brassica carinata HOM05D001301 ORTHO05D001169 2.1e-06 57.4 207 28.5
Cfa017218 Carpinus fangiana HOM05D001301 ORTHO05D001169 2.1e-06 57.4 162 31.5
CiPaw.09G208100 Carya illinoinensis HOM05D001301 ORTHO05D001169 2.1e-06 57.4 181 31.5
Thhalv10010607m.g Eutrema salsugineum HOM05D001301 ORTHO05D001169 2.1e-06 57.4 222 27.9
Lj3g0016603 Lotus japonicus HOM05D001301 ORTHO05D001169 2.1e-06 57.4 167 27.5
PSO541G3503 Papaver somniferum HOM05D001301 ORTHO05D001169 2.1e-06 57.4 197 28.9
QL05p039495 Quercus lobata HOM05D001301 ORTHO05D001169 2.1e-06 57.4 179 28.5
RcHm_v2.0_Chr2g0126241 Rosa chinensis HOM05D001301 ORTHO05D001169 2.1e-06 57.4 179 30.7
ATR0680G080 Amborella trichopoda HOM05D001301 ORTHO05D001169 2.8e-06 57.0 181 30.9
MSTRG.13187 Avicennia marina HOM05D001301 ORTHO05D001169 2.8e-06 57.0 244 27.0
A04p07420 Brassica napus HOM05D001301 ORTHO05D001169 2.8e-06 57.0 176 29.0
C04p41070 Brassica napus HOM05D001301 ORTHO05D001169 2.8e-06 57.0 174 29.3
BolC4t25690H Brassica oleracea HOM05D001301 ORTHO05D001169 2.8e-06 57.0 174 29.3
BraA04t16437Z Brassica rapa HOM05D001301 ORTHO05D001169 2.8e-06 57.0 176 29.0
CAN.G1627.10 Capsicum annuum HOM05D001301 ORTHO05D001169 2.8e-06 57.0 179 29.6
CsaV3_6G013030 Cucumis sativus L. HOM05D001301 ORTHO05D001169 2.8e-06 57.0 179 27.4
Manes.17G043200 Manihot esculenta HOM05D001301 ORTHO05D001169 2.8e-06 57.0 181 29.3
RcHm_v2.0_Chr3g0463291 Rosa chinensis HOM05D001301 ORTHO05D001169 2.8e-06 57.0 165 31.5
Hund21247 Selenicereus undatus HOM05D001301 ORTHO05D001169 2.8e-06 57.0 179 30.2
TAR629G3428 Trochodendron aralioides HOM05D001301 ORTHO05D001169 2.8e-06 57.0 166 31.3
arahy.Tifrunner.gnm1.ann1.M704A6 Arachis hypogaea HOM05D001301 ORTHO05D001169 3.6e-06 56.6 176 29.5
arahy.Tifrunner.gnm1.ann1.XDV1T5 Arachis hypogaea HOM05D001301 ORTHO05D001169 3.6e-06 56.6 179 29.1
Carub.0005s1824 Capsella rubella HOM05D001301 ORTHO05D001169 3.6e-06 56.6 171 31.0
Cc02_g13050 Coffea canephora HOM05D001301 ORTHO05D001169 3.6e-06 56.6 167 34.1
Haze_20989 Corylus avellana HOM05D001301 ORTHO05D001169 3.6e-06 56.6 175 32.6
Gohir.D02G180700 Gossypium hirsutum HOM05D001301 ORTHO05D001169 3.6e-06 56.6 283 26.9
PSO675G6697 Papaver somniferum HOM05D001301 ORTHO05D001169 3.6e-06 56.6 166 30.1
SGA_v2.0_scaffold7G03977 Striga asiatica HOM05D001301 ORTHO05D001169 3.6e-06 56.6 172 28.5
Thecc.06G191000 Theobroma cacao HOM05D001301 ORTHO05D001169 3.6e-06 56.6 187 31.0
TAR369G0587 Trochodendron aralioides HOM05D001301 ORTHO05D001169 3.6e-06 56.6 172 30.8
TAR369G0741 Trochodendron aralioides HOM05D001301 ORTHO05D001169 3.6e-06 56.6 172 30.2
Aa31LG8G17730 Aethionema arabicum HOM05D001301 ORTHO05D001169 4.8e-06 56.2 198 28.8
Ah.14g089310 Amaranthus hybridus HOM05D001301 ORTHO05D001169 4.8e-06 56.2 199 28.1
AL5G32380 Arabidopsis lyrata HOM05D001301 ORTHO05D001169 4.8e-06 56.2 170 30.6
A10p26580 Brassica napus HOM05D001301 ORTHO05D001169 4.8e-06 56.2 174 31.6
BraA04t18496Z Brassica rapa HOM05D001301 ORTHO05D001169 4.8e-06 56.2 168 31.0
BraA10t44715Z Brassica rapa HOM05D001301 ORTHO05D001169 4.8e-06 56.2 174 31.6
Migut.H01072 Erythranthe guttata HOM05D001301 ORTHO05D001169 4.8e-06 56.2 183 25.1
Eucgr.A00509 Eucalyptus grandis HOM05D001301 ORTHO05D001169 4.8e-06 56.2 190 28.9
Glyma.13G241300 Glycine max HOM05D001301 ORTHO05D001169 4.8e-06 56.2 179 29.1
Phvul.006G187800 Phaseolus vulgaris HOM05D001301 ORTHO05D001169 4.8e-06 56.2 179 29.6
CDE02G1056 Ceratophyllum demersum HOM05D001301 ORTHO05D001169 6.2e-06 55.8 172 32.6
Ciclev10015933m.g Citrus clementina HOM05D001301 ORTHO05D001169 6.2e-06 55.8 166 29.5
Migut.H01510 Erythranthe guttata HOM05D001301 ORTHO05D001169 6.2e-06 55.8 166 32.5
Lj3g0006543 Lotus japonicus HOM05D001301 ORTHO05D001169 6.2e-06 55.8 174 32.8
PGR142G4081 Punica granatum HOM05D001301 ORTHO05D001169 6.2e-06 55.8 164 32.3
COL.COLO4_25688 Corchorus olitorius HOM05D001301 ORTHO05D001169 8.1e-06 55.5 191 29.8
DCAR_019187 Daucus carota HOM05D001301 ORTHO05D001169 8.1e-06 55.5 213 26.8
Hma1.2p1_0881F.1_g231950 Hydrangea macrophylla HOM05D001301 ORTHO05D001169 8.1e-06 55.5 166 31.3
Manes.12G091000 Manihot esculenta HOM05D001301 ORTHO05D001169 8.1e-06 55.5 194 29.9
PSO210G4916 Papaver somniferum HOM05D001301 ORTHO05D001169 8.1e-06 55.5 182 29.1
Solyc03g006510.4 Solanum lycopersicum HOM05D001301 ORTHO05D001169 8.1e-06 55.5 179 28.5
Sopen03g002510 Solanum pennellii HOM05D001301 ORTHO05D001169 8.1e-06 55.5 179 27.9
PGSC0003DMG400012807 Solanum tuberosum HOM05D001301 ORTHO05D001169 8.1e-06 55.5 179 27.9


User provided reference genes

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