Gene: AT3G51890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G51890
  • Transcript Identifier AT3G51890.1
  • Gene Type Coding gene
  • Location Chr3 : 19249686-19250890 : negative

Gene Family Information

  • ID HOM05D001301
  • #Genes/#Species 483/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G51890.1
  • Alias CLC3,clathrin light chain 3
  • uniprot F4J5M9

Descriptions

  • Description Clathrin light chain protein
  • Computational description Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 358 Blast hits to 358 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 68; Plants - 116; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048268
IBA
Gene Ontologyclathrin coat assembly1
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0006886
IEA
Gene Ontologyintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0072583
IBA
Gene Ontologyclathrin-dependent endocytosis1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005198
IEA
Gene Ontologystructural molecule activity
GO:0005198
IEA
InterProstructural molecule activity
GO:0032050
IBA
Gene Ontologyclathrin heavy chain binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030132
IEA
Gene Ontologyclathrin coat of coated pit
GO:0030132
IEA
InterProclathrin coat of coated pit
GO:0030130
IEA
Gene Ontologyclathrin coat of trans-Golgi network vesicle
GO:0030130
IEA
InterProclathrin coat of trans-Golgi network vesicle
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005905
IEA
GOA Databaseclathrin-coated pit
GO:0030659
IEA
GOA Databasecytoplasmic vesicle membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0030125
IBA
Gene Ontologyclathrin vesicle coat1
GO:0005886
IBA
Gene Ontologyplasma membrane1
GO:0005829
HDA
Gene Ontologycytosol2
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000996 Clathrin light chain
Mapman id Description
22.3.1.1.2 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion structure.light chain