Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.6e-158 562.8 293 100.0
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.6e-121 439.1 295 75.9
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 3.2e-111 405.6 292 72.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.2e-109 398.3 297 70.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.0e-105 386.3 297 68.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 6.5e-104 381.3 304 64.8
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.5e-103 380.2 297 67.0
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-103 379.8 300 67.0
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.9e-103 379.8 300 67.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.2e-103 379.0 297 67.3
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.2e-103 379.0 302 65.6
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.2e-103 378.6 301 66.1
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 9.4e-103 377.5 307 65.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.7e-102 375.9 301 65.8
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.6e-102 375.6 300 66.3
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.7e-102 375.2 307 65.8
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.0e-101 374.0 302 66.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.0e-101 374.0 302 63.9
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.4e-101 373.6 300 66.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.4e-101 373.6 300 66.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 2.3e-101 372.9 306 65.7
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 3.0e-101 372.5 301 65.1
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.0e-101 372.1 302 64.9
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.2e-101 371.7 301 66.4
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 5.2e-101 371.7 301 64.8
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 8.8e-101 370.9 307 65.1
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 8.8e-101 370.9 303 65.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.5e-100 370.2 302 64.2
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.5e-100 370.2 300 64.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-100 370.2 297 65.7
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-100 370.2 305 65.2
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.0e-100 369.8 303 65.3
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.6e-100 369.4 300 64.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 4.4e-100 368.6 299 63.9
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 5.7e-100 368.2 304 66.1
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 7.5e-100 367.9 307 65.5
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.7e-99 366.7 306 65.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.7e-99 366.7 302 63.9
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.7e-99 366.7 300 64.3
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.7e-99 366.7 300 64.3
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.2e-99 366.3 323 63.2
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.8e-99 365.9 304 64.8
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.8e-99 365.9 299 63.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 4.8e-99 365.2 304 63.2
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 4.8e-99 365.2 304 63.2
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 4.8e-99 365.2 302 63.2
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.8e-99 365.2 298 66.1
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 6.3e-99 364.8 304 63.2
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.3e-99 364.4 298 64.1
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.1e-98 364.0 298 63.8
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-98 363.2 304 63.2
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-98 363.2 304 63.2
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.1e-98 362.5 305 63.6
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 5.4e-98 361.7 304 62.8
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.4e-98 361.7 304 62.5
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 7.0e-98 361.3 303 62.4
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.1e-98 360.9 299 63.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.2e-97 360.5 301 65.1
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.2e-97 360.5 300 64.3
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.6e-97 360.1 303 63.0
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.6e-97 360.1 303 63.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.6e-97 360.1 300 63.3
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.0e-97 359.8 299 64.2
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.0e-97 359.8 302 62.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.0e-97 359.8 299 65.2
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.7e-97 359.4 306 63.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.7e-97 359.4 303 62.7
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.5e-97 359.0 302 63.9
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 5.9e-97 358.2 301 62.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 5.9e-97 358.2 301 62.5
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.7e-96 356.7 303 62.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.7e-96 356.7 300 63.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.7e-96 356.7 297 63.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.7e-96 356.7 304 62.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.7e-96 356.7 295 63.7
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.3e-96 356.3 295 64.1
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.3e-96 356.3 295 64.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.9e-96 355.9 301 63.8
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.9e-96 355.9 299 62.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.9e-96 355.9 300 63.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.0e-96 355.1 297 64.0
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.5e-95 353.6 306 62.4
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.5e-95 353.6 306 62.4
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.5e-95 353.6 306 62.4
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.5e-95 353.6 301 62.5
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.9e-95 353.2 302 62.9
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.9e-95 353.2 295 62.7
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.5e-95 352.8 301 61.5
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.5e-95 352.8 298 62.4
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-95 352.8 303 63.4
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.5e-95 352.8 304 61.5
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.5e-95 352.8 311 59.8
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.3e-95 352.4 303 63.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.3e-95 352.4 300 61.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.3e-95 352.4 300 62.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 4.2e-95 352.1 301 61.5
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.2e-95 351.3 295 62.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.5e-95 350.9 304 61.5
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.2e-94 350.5 297 62.6
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-94 350.5 297 62.6
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.2e-94 350.5 297 62.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.1e-94 349.7 301 60.8
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.8e-94 349.4 285 66.0
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 8.0e-94 347.8 287 64.1
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.0e-94 347.8 304 61.5
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.4e-93 347.1 304 61.5
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.2e-91 339.7 299 60.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.1e-90 335.9 307 60.3
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 4.1e-90 335.5 301 59.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-89 333.6 301 59.5
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.7e-89 332.8 312 58.7
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.7e-88 330.1 302 59.6
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.9e-88 329.3 292 61.3
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.9e-87 326.6 302 59.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.5e-84 314.7 278 61.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 9.8e-84 314.3 289 58.8
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 7.0e-82 308.1 303 57.1
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.2e-82 307.8 296 57.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-81 305.8 302 57.6
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 3.9e-72 275.8 283 56.2
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 3.1e-69 266.2 195 66.2
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.2e-67 260.0 292 51.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.3e-64 250.8 296 52.7
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-63 247.3 245 55.1
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.7e-62 242.3 295 49.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-61 241.1 245 55.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.8e-51 206.1 134 76.1
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.9e-48 196.1 312 41.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.2e-42 176.4 193 53.9
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 7.1e-42 175.3 196 49.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-41 173.7 271 43.2
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 5.1e-40 169.1 274 41.2
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 8.7e-40 168.3 210 49.5
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 6.2e-38 162.2 185 51.9
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 5.5e-34 149.1 106 70.8
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.6e-33 147.5 164 52.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 9.6e-31 138.3 102 62.7
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.8e-30 136.7 221 41.2
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.0e-27 128.3 186 44.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.1e-26 122.1 186 42.5
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-21 107.1 186 39.8
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 9.0e-21 105.1 212 37.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.0e-19 101.7 61 72.1
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-17 94.7 295 31.2
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.2e-17 94.7 66 63.6
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 6.1e-17 92.4 82 53.7
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 7.9e-17 92.0 295 30.8
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.1e-13 81.6 146 44.5
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-11 73.9 112 45.5
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 5.5e-10 69.3 52 71.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-09 67.4 112 42.0
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 5.1e-08 62.8 43 62.8
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 8.8e-08 62.0 90 47.8
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.4e-07 59.7 43 58.1


User provided reference genes

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