Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_14420 Physcomitrium patens HOM05D001601 ORTHO05D002628 9.4e-40 166.4 83 100.0
Pp3c3_15850 Physcomitrium patens HOM05D001601 ORTHO05D002628 1.0e-25 119.8 84 71.4
Pp3c26_4390 Physcomitrium patens HOM05D001601 ORTHO05D002628 1.9e-24 115.5 79 73.4
AagrBONN_evm.TU.Sc2ySwM_362.2761 Anthoceros agrestis HOM05D000884 ORTHO05D002628 1.5e-21 105.9 84 59.5
SMO266G0108 Selaginella moellendorffii HOM05D001601 ORTHO05D002628 1.4e-19 99.4 81 60.5
SEGI_08844 Sequoiadendron giganteum HOM05D001601 ORTHO05D002628 1.5e-13 79.3 70 51.4
Atru.chr5.3376 Acer truncatum HOM05D001601 ORTHO05D002628 2.8e-12 75.1 68 50.0
Cfa005256 Carpinus fangiana HOM05D001601 ORTHO05D002628 8.3e-12 73.6 68 48.5
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 8.3e-12 73.6 68 47.1
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 8.3e-12 73.6 68 48.5
ATR0304G020 Amborella trichopoda HOM05D001601 ORTHO05D002628 1.4e-11 72.8 81 46.9
ATR0304G046 Amborella trichopoda HOM05D001601 ORTHO05D002628 1.4e-11 72.8 81 44.4
arahy.Tifrunner.gnm1.ann1.GJBP3C Arachis hypogaea HOM05D001601 ORTHO05D002628 1.4e-11 72.8 81 45.7
arahy.Tifrunner.gnm1.ann1.W4LCKL Arachis hypogaea HOM05D001601 ORTHO05D002628 1.4e-11 72.8 81 45.7
Psat6g232480 Pisum sativum HOM05D001601 ORTHO05D002628 1.8e-11 72.4 65 46.2
TPR.G2429 Trifolium pratense HOM05D001601 ORTHO05D002628 1.8e-11 72.4 59 55.9
TAR625G1180 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.8e-11 72.4 69 50.7
CiPaw.06G121200 Carya illinoinensis HOM05D001601 ORTHO05D002628 2.4e-11 72.0 81 44.4
MELO3C021653.2 Cucumis melo HOM05D001601 ORTHO05D002628 2.4e-11 72.0 68 47.1
CsaV3_5G026500 Cucumis sativus L. HOM05D001601 ORTHO05D002628 2.4e-11 72.0 68 47.1
Manes.04G072000 Manihot esculenta HOM05D001601 ORTHO05D002628 4.1e-11 71.2 82 42.7
Thecc.02G058200 Theobroma cacao HOM05D001601 ORTHO05D002628 4.1e-11 71.2 68 44.1
VMungo0720G1541 Vigna mungo HOM05D001601 ORTHO05D002628 4.1e-11 71.2 65 47.7
Ciclev10030105m.g Citrus clementina HOM05D001601 ORTHO05D002628 5.4e-11 70.9 68 47.1
Lj5g0000172 Lotus japonicus HOM05D001601 ORTHO05D002628 5.4e-11 70.9 65 50.8
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 7.0e-11 70.5 65 46.2
Glyma.20G107466 Glycine max HOM05D001601 ORTHO05D002628 1.6e-10 69.3 65 47.7
MBI08_g34004_MAGBIO Magnolia biondii HOM05D001601 ORTHO05D002628 1.6e-10 69.3 68 44.1
Potri.009G136300 Populus trichocarpa HOM05D001601 ORTHO05D002628 1.6e-10 69.3 82 42.7
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 2.0e-10 68.9 65 47.7
ClCG02G004010 Citrullus lanatus HOM05D001601 ORTHO05D002628 2.7e-10 68.6 68 45.6
ECA234G0339 Erigeron canadensis HOM05D001601 ORTHO05D002628 2.7e-10 68.6 70 42.9
Lsat_1_v5_gn_4_71800 Lactuca sativa HOM05D001601 ORTHO05D002628 2.7e-10 68.6 68 44.1
Mapoly0028s0100 Marchantia polymorpha HOM05D000884 ORTHO05D002958 2.7e-10 68.6 61 52.5
Nn3g19711 Nelumbo nucifera HOM05D001601 ORTHO05D002628 3.5e-10 68.2 69 47.8
Lj9A394T44 Lonicera japonica HOM05D001601 ORTHO05D002628 4.5e-10 67.8 81 40.7
Phvul.007G019000 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 4.5e-10 67.8 65 44.6
Prupe.8G166800 Prunus persica HOM05D001601 ORTHO05D002628 4.5e-10 67.8 68 44.1
TWI31G0590 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 4.5e-10 67.8 70 44.3
ATR1155G029 Amborella trichopoda HOM05D001601 ORTHO05D002628 5.9e-10 67.4 59 52.5
Aqoxy4G02705 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 5.9e-10 67.4 68 41.2
TWI75G1106 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 5.9e-10 67.4 70 42.9
Aqoxy2G01591 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 7.7e-10 67.0 68 41.2
Hma1.2p1_0032F.1_g019320 Hydrangea macrophylla HOM05D001601 ORTHO05D002628 7.7e-10 67.0 68 44.1
Sabra09G0105900 Salix brachista HOM05D001601 ORTHO05D002628 7.7e-10 67.0 82 43.9
CDE02G0907 Ceratophyllum demersum HOM05D001601 ORTHO05D002628 1.0e-09 66.6 68 42.6
Gohir.A12G036800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 1.0e-09 66.6 81 40.7
Lalb_Chr02g0143431 Lupinus albus HOM05D001601 ORTHO05D002628 1.0e-09 66.6 65 47.7
ATR0304G064 Amborella trichopoda HOM05D001601 ORTHO05D002628 1.3e-09 66.2 80 41.2
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 1.3e-09 66.2 68 42.6
DCAR_004707 Daucus carota HOM05D001601 ORTHO05D002628 2.2e-09 65.5 68 45.6
DCAR_004708 Daucus carota HOM05D001601 ORTHO05D002628 2.2e-09 65.5 68 45.6
Prupe.8G166900 Prunus persica HOM05D001601 ORTHO05D002628 2.2e-09 65.5 68 42.6
CANSAT25G3111 Cannabis sativa HOM05D001601 ORTHO05D002628 2.9e-09 65.1 65 43.1
Sed0019722 Sechium edule HOM05D001601 ORTHO05D002628 2.9e-09 65.1 68 44.1
Mapoly0124s0021 Marchantia polymorpha HOM05D000884 ORTHO05D002958 3.8e-09 64.7 61 49.2
GSVIVG01013720001 Vitis vinifera HOM05D001601 ORTHO05D002628 3.8e-09 64.7 81 42.0
FvH4_2g15460 Fragaria vesca HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 41.2
FAN24G0324 Fragaria x ananassa HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 41.2
PGR042G3640 Punica granatum HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 42.6
Rhsim05G0054200 Rhododendron simsii HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 44.1
RcHm_v2.0_Chr6g0278441 Rosa chinensis HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 41.2
RcHm_v2.0_Chr6g0278471 Rosa chinensis HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 42.6
GSVIVG01024008001 Vitis vinifera HOM05D001601 ORTHO05D002628 5.0e-09 64.3 68 44.1
ATR0304G036 Amborella trichopoda HOM05D001601 ORTHO05D002628 8.5e-09 63.5 89 39.3
HanXRQChr03g0071131 Helianthus annuus HOM05D001601 ORTHO05D002628 8.5e-09 63.5 68 42.6
TAR628G0026 Trochodendron aralioides HOM05D001601 ORTHO05D002628 8.5e-09 63.5 68 42.6
Dinv14116 Davidia involucrata HOM05D001601 ORTHO05D002628 1.1e-08 63.2 61 44.3
Gohir.D12G035600 Gossypium hirsutum HOM05D001601 ORTHO05D002628 1.1e-08 63.2 68 41.2
Gorai.008G036900 Gossypium raimondii HOM05D001601 ORTHO05D002628 1.1e-08 63.2 68 41.2
FvH4_2g15470 Fragaria vesca HOM05D001601 ORTHO05D002628 1.5e-08 62.8 68 42.6
FAN15G2735 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.5e-08 62.8 68 42.6
FAN20G1511 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.5e-08 62.8 68 42.6
PSO170G4243 Papaver somniferum HOM05D001601 ORTHO05D002628 1.5e-08 62.8 61 45.9
Duzib132G1094 Durio zibethinus HOM05D001601 ORTHO05D002628 1.9e-08 62.4 68 41.2
Nn6g34392 Nelumbo nucifera HOM05D001601 ORTHO05D002628 1.9e-08 62.4 58 46.6
PSO700G0026 Papaver somniferum HOM05D001601 ORTHO05D002628 1.9e-08 62.4 61 45.9
AagrBONN_evm.TU.Sc2ySwM_368.254 Anthoceros agrestis HOM05D000884 ORTHO05D002958 2.5e-08 62.0 80 37.5
Eucgr.G01783 Eucalyptus grandis HOM05D001601 ORTHO05D002628 5.5e-08 60.8 70 40.0
unitig_26.g9753 Utricularia gibba HOM05D001601 ORTHO05D002628 5.5e-08 60.8 68 38.2
CSS0049556 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 7.2e-08 60.5 68 41.2
GSVIVG01013744001 Vitis vinifera HOM05D001601 ORTHO05D002628 7.2e-08 60.5 61 47.5
AT2G16910 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 1.2e-07 59.7 65 43.1
CARHR107200 Cardamine hirsuta HOM05D001601 ORTHO05D002628 1.2e-07 59.7 65 43.1
THA.LOC104819650 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 1.2e-07 59.7 65 41.5
Carub.0003s3072 Capsella rubella HOM05D001601 ORTHO05D002628 1.6e-07 59.3 65 43.1
Sp3g30190 Schrenkiella parvula HOM05D001601 ORTHO05D002628 1.6e-07 59.3 65 43.1
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 2.1e-07 58.9 60 43.3
AL3G49670 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 3.6e-07 58.2 65 41.5
BcaB08g34676 Brassica carinata HOM05D001601 ORTHO05D002628 3.6e-07 58.2 65 41.5
Os02g0120500 Oryza sativa ssp. japonica HOM05D001601 ORTHO05D002628 3.6e-07 58.2 64 40.6
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 3.6e-07 58.2 68 39.7
Aa31LG8G14100 Aethionema arabicum HOM05D001601 ORTHO05D002628 4.7e-07 57.8 65 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4998 Anthoceros agrestis HOM05D000884 ORTHO05D002958 4.7e-07 57.8 65 40.0
A07p04210 Brassica napus HOM05D001601 ORTHO05D002628 4.7e-07 57.8 65 41.5
BraA07t28212Z Brassica rapa HOM05D001601 ORTHO05D002628 4.7e-07 57.8 65 41.5
Cc04_g12140 Coffea canephora HOM05D001601 ORTHO05D002628 4.7e-07 57.8 68 38.2
Haze_12188 Corylus avellana HOM05D001601 ORTHO05D002628 4.7e-07 57.8 63 46.0
MD05G1123000 Malus domestica HOM05D001601 ORTHO05D002628 4.7e-07 57.8 68 39.7
Mapoly0054s0021 Marchantia polymorpha HOM05D000884 ORTHO05D006936 4.7e-07 57.8 68 36.8
BcaC01g02972 Brassica carinata HOM05D001601 ORTHO05D002628 6.1e-07 57.4 65 41.5
A03p46130 Brassica napus HOM05D001601 ORTHO05D002628 6.1e-07 57.4 65 41.5
C03p57610 Brassica napus HOM05D001601 ORTHO05D002628 6.1e-07 57.4 65 41.5
BraA03t13741Z Brassica rapa HOM05D001601 ORTHO05D002628 6.1e-07 57.4 65 41.5
Lj3A1054T81 Lonicera japonica HOM05D001601 ORTHO05D002628 6.1e-07 57.4 64 40.6
BcaB03g16426 Brassica carinata HOM05D001601 ORTHO05D002628 8.0e-07 57.0 65 41.5
Cfa009154 Carpinus fangiana HOM05D001601 ORTHO05D002628 8.0e-07 57.0 60 43.3
Zm00001eb208200 Zea mays HOM05D001601 ORTHO05D002628 8.0e-07 57.0 64 39.1
MSTRG.16976 Avicennia marina HOM05D001601 ORTHO05D002628 1.0e-06 56.6 68 38.2
CAN.G432.3 Capsicum annuum HOM05D001601 ORTHO05D002628 1.4e-06 56.2 81 37.0
BolC3t18036H Brassica oleracea HOM05D001601 ORTHO05D002628 1.8e-06 55.8 65 40.0
Pp3c13_6760 Physcomitrium patens HOM05D000884 ORTHO05D002958 1.8e-06 55.8 64 37.5
CiPaw.06G071400 Carya illinoinensis HOM05D001601 ORTHO05D002628 3.0e-06 55.1 60 41.7
Migut.B01188 Erythranthe guttata HOM05D001601 ORTHO05D002628 3.0e-06 55.1 68 38.2
Thhalv10022620m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 3.0e-06 55.1 65 40.0
BcaC06g36193 Brassica carinata HOM05D001601 ORTHO05D002628 4.0e-06 54.7 65 40.0
C07p06690 Brassica napus HOM05D001601 ORTHO05D002628 4.0e-06 54.7 65 40.0
BolC7t41091H Brassica oleracea HOM05D001601 ORTHO05D002628 4.0e-06 54.7 65 40.0
Lsat_1_v5_gn_8_155680 Lactuca sativa HOM05D001601 ORTHO05D002628 4.0e-06 54.7 65 36.9
TAR629G2382 Trochodendron aralioides HOM05D001601 ORTHO05D002628 5.2e-06 54.3 64 39.1
Nitab4.5_0003730g0030 Nicotiana tabacum HOM05D001601 ORTHO05D002628 6.8e-06 53.9 68 36.8
Sopen08g018260 Solanum pennellii HOM05D001601 ORTHO05D002628 6.8e-06 53.9 81 37.0
PGSC0003DMG400008195 Solanum tuberosum HOM05D001601 ORTHO05D002628 6.8e-06 53.9 81 37.0
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 8.8e-06 53.5 64 35.9
HPP92_012948 Vanilla planifolia HOM05D001601 ORTHO05D002628 8.8e-06 53.5 62 35.5


User provided reference genes

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