Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.0e-100 367.5 180 100.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-80 303.5 217 71.9
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.4e-79 298.5 217 71.0
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-75 287.0 217 69.1
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.5e-74 282.3 185 77.3
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 9.6e-74 280.4 177 79.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-72 276.2 180 77.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-69 266.5 202 69.3
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 4.6e-68 261.5 180 73.9
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-62 243.4 217 62.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-58 229.9 159 74.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.0e-58 229.6 189 66.1
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.1e-56 220.7 183 65.6
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 6.1e-52 208.0 150 68.7
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-38 162.5 112 74.1
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 8.3e-33 144.4 113 64.6
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 4.1e-32 142.1 93 77.4
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.5e-26 123.6 194 36.6
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 3.4e-26 122.5 196 36.7
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 3.4e-26 122.5 196 36.7
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.4e-26 122.5 224 34.4
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 7.5e-26 121.3 198 36.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.3e-25 120.6 186 37.1
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.2e-25 119.8 199 36.7
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.2e-25 119.8 192 37.0
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.8e-25 119.4 205 35.1
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.8e-25 119.4 198 35.4
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.8e-25 119.4 198 35.4
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.8e-25 119.4 197 34.5
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.7e-25 119.0 187 35.8
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 4.9e-25 118.6 197 36.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.9e-25 118.6 204 34.8
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 8.3e-25 117.9 192 36.5
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 8.3e-25 117.9 201 35.8
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 8.3e-25 117.9 186 37.1
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.1e-24 117.5 192 36.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.1e-24 117.5 213 34.3
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.4e-24 117.1 186 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.8e-24 116.7 204 33.8
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.8e-24 116.7 186 36.0
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.8e-24 116.7 197 34.5
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.1e-24 115.9 174 38.5
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 3.1e-24 115.9 198 35.9
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 3.1e-24 115.9 199 35.2
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 4.1e-24 115.5 186 36.0
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 4.1e-24 115.5 224 31.2
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.1e-24 115.5 193 33.7
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 5.4e-24 115.2 197 34.5
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 5.4e-24 115.2 188 36.2
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 5.4e-24 115.2 213 33.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 5.4e-24 115.2 186 36.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 5.4e-24 115.2 198 35.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 5.4e-24 115.2 197 34.0
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 5.4e-24 115.2 197 34.0
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 5.4e-24 115.2 197 34.0
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 5.4e-24 115.2 197 34.5
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 7.0e-24 114.8 197 35.0
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 7.0e-24 114.8 192 35.4
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 7.0e-24 114.8 186 38.2
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.0e-24 114.8 198 35.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 7.0e-24 114.8 213 32.4
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 7.0e-24 114.8 198 34.8
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 7.0e-24 114.8 186 36.6
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 7.0e-24 114.8 199 32.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 9.2e-24 114.4 190 35.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.2e-23 114.0 186 36.0
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.2e-23 114.0 197 35.0
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.6e-23 113.6 222 33.3
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.6e-23 113.6 204 33.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.0e-23 113.2 202 32.2
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.0e-23 113.2 190 35.8
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.0e-23 113.2 220 35.0
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.0e-23 113.2 186 36.0
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.7e-23 112.8 197 35.0
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.7e-23 112.8 197 35.0
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.7e-23 112.8 197 35.0
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.7e-23 112.8 197 34.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.5e-23 112.5 188 36.7
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 3.5e-23 112.5 186 34.9
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 3.5e-23 112.5 198 34.8
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 4.5e-23 112.1 198 32.3
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 4.5e-23 112.1 186 36.0
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 5.9e-23 111.7 199 31.7
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 7.8e-23 111.3 188 36.2
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.0e-22 110.9 183 35.5
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.0e-22 110.9 198 32.8
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.3e-22 110.5 222 33.3
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-22 110.5 222 32.9
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.7e-22 110.2 186 34.9
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 2.9e-22 109.4 186 35.5
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 2.9e-22 109.4 186 35.5
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 2.9e-22 109.4 186 35.5
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.9e-22 109.4 222 32.9
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.9e-22 109.4 192 33.3
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 3.8e-22 109.0 186 35.5
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 3.8e-22 109.0 186 34.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 5.0e-22 108.6 186 34.9
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.1e-21 107.5 186 33.9
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.1e-21 107.5 186 34.4
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.5e-21 107.1 186 35.5
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.9e-21 106.7 184 33.2
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 2.5e-21 106.3 174 35.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.5e-21 106.3 177 33.3
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.6e-21 105.1 176 34.1
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 7.3e-21 104.8 169 34.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 9.5e-21 104.4 176 34.1
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.2e-20 104.0 221 32.6
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.6e-20 103.6 238 29.8
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.1e-20 103.2 175 34.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 6.1e-20 101.7 165 34.5
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.0e-19 100.9 189 32.8
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.4e-19 100.5 204 31.4
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.8e-19 100.1 181 33.7
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.3e-19 99.8 195 33.8
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 4.0e-19 99.0 200 33.0
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 4.0e-19 99.0 188 30.9
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 5.2e-19 98.6 188 33.0
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 6.8e-19 98.2 174 31.6
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 8.9e-19 97.8 174 31.6
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.2e-18 97.4 186 33.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.5e-18 97.1 170 33.5
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 4.4e-18 95.5 160 37.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.7e-18 95.1 235 29.8
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 7.5e-18 94.7 243 27.6
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 9.8e-18 94.4 163 34.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.3e-17 94.0 167 32.3
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.2e-17 93.2 97 47.4
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 1.1e-16 90.9 51 82.4
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.2e-16 89.4 112 37.5
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.2e-16 89.4 112 37.5
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.0e-15 86.7 97 42.3
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 2.7e-15 86.3 131 32.8
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 7.8e-15 84.7 100 41.0
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.0e-14 84.3 233 27.0
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.3e-14 83.2 91 44.0
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 8.6e-14 81.3 91 41.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 3.3e-13 79.3 192 26.6
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.2e-12 77.4 130 36.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.2e-12 77.4 92 39.1
Pp3c11_8200 Physcomitrium patens HOM05D004663 ORTHO05D308975 5.8e-10 68.6 33 93.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 9.8e-10 67.8 157 30.6
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 3.7e-09 65.9 91 35.2
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 2.4e-08 63.2 39 74.4
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 4.1e-08 62.4 74 40.5
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 4.6e-07 58.9 55 52.7
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.7e-06 57.0 93 32.3
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 3.0e-06 56.2 72 45.8


User provided reference genes

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