Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 0.0e+00 1532.3 829 100.0
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 8.2e-160 568.5 678 48.7
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.1e-119 435.3 609 41.9
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 3.6e-115 420.2 580 41.0
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 3.4e-113 413.7 662 38.2
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.6e-110 404.8 667 37.9
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.8e-106 391.3 664 38.3
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.8e-106 391.3 632 39.1
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.3e-104 385.2 686 35.1
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 3.7e-104 383.6 594 39.2
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 4.9e-104 383.3 595 38.7
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.1e-103 382.1 614 37.8
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 2.4e-103 380.9 657 37.3
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 3.2e-103 380.6 569 39.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 4.1e-103 380.2 657 36.8
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.2e-102 378.6 579 39.4
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.5e-102 377.1 592 39.0
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 4.6e-102 376.7 657 36.5
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 7.8e-102 375.9 614 37.1
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.0e-101 375.6 624 36.9
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 6.6e-101 372.9 595 38.2
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 6.6e-101 372.9 595 38.2
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 8.6e-101 372.5 586 37.9
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 1.5e-100 371.7 599 37.6
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 4.3e-100 370.2 612 36.9
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 5.6e-100 369.8 660 35.6
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 5.6e-100 369.8 618 37.9
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 9.5e-100 369.0 660 35.6
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 9.5e-100 369.0 613 37.2
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.2e-99 368.6 645 36.4
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.2e-99 368.6 659 35.1
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.1e-99 367.9 692 35.3
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 4.7e-99 366.7 627 36.5
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 1.1e-98 365.5 653 36.6
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.4e-98 365.2 663 35.7
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 1.4e-98 365.2 627 36.0
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 6.8e-98 362.8 594 35.9
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 6.8e-98 362.8 658 35.6
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 8.9e-98 362.5 619 36.7
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.2e-97 362.1 583 36.9
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.5e-97 361.7 671 37.3
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 1.5e-97 361.7 622 37.8
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 3.4e-97 360.5 580 37.2
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 3.4e-97 360.5 627 36.5
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.4e-97 360.5 640 35.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 4.4e-97 360.1 652 35.4
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 9.8e-97 359.0 621 36.1
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 2.2e-96 357.8 720 35.1
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 2.2e-96 357.8 747 33.9
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 2.9e-96 357.5 624 36.1
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 3.7e-96 357.1 614 36.2
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 4.9e-96 356.7 577 36.9
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 4.9e-96 356.7 580 36.9
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 6.4e-96 356.3 666 35.0
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 6.4e-96 356.3 664 35.1
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 8.3e-96 355.9 601 35.4
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.1e-95 355.5 647 37.9
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.1e-95 355.5 657 35.6
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.4e-95 355.1 635 34.6
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 2.4e-95 354.4 657 35.2
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 7.0e-95 352.8 715 33.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 9.2e-95 352.4 668 34.7
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.2e-94 352.1 619 36.3
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-94 352.1 599 37.1
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 1.2e-94 352.1 654 35.0
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.6e-94 351.7 650 35.4
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.0e-94 351.3 651 34.9
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 3.5e-94 350.5 620 36.6
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 3.5e-94 350.5 582 35.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 4.6e-94 350.1 620 36.8
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 6.0e-94 349.7 620 36.8
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 7.8e-94 349.4 661 35.2
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.7e-93 348.2 671 36.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.3e-93 347.8 643 36.1
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 3.0e-93 347.4 653 34.8
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 3.9e-93 347.1 615 36.1
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 5.0e-93 346.7 649 36.4
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 5.0e-93 346.7 614 36.2
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 5.0e-93 346.7 671 35.9
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 6.6e-93 346.3 582 36.8
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 8.6e-93 345.9 684 35.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.9e-92 344.7 620 36.3
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.3e-92 342.8 693 35.9
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 9.5e-92 342.4 619 35.9
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 8.1e-91 339.3 556 38.8
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 1.8e-90 338.2 617 34.8
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 4.0e-90 337.0 655 34.2
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 8.9e-90 335.9 556 38.1
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.6e-89 334.3 650 34.8
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 5.8e-89 333.2 620 34.2
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 9.9e-89 332.4 614 35.8
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 6.4e-88 329.7 619 35.1
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 9.2e-87 325.9 652 33.4
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 1.3e-85 322.0 600 35.0
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 8.6e-85 319.3 622 34.4
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 1.1e-84 318.9 624 32.7
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 5.2e-82 310.1 543 35.5
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.2e-80 304.7 551 36.1
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 2.9e-80 304.3 675 31.4
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 2.4e-79 301.2 591 34.0
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.4e-73 280.8 427 39.1
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 2.2e-72 278.1 660 30.9
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 3.3e-68 264.2 807 28.7
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.6e-68 262.7 615 31.2
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.9e-60 238.4 672 29.6
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.1e-54 218.4 334 37.7
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.3e-53 215.7 631 29.0
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 2.1e-51 208.4 631 28.5
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 1.7e-48 198.7 368 31.5
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 6.5e-40 170.2 251 36.3
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.3e-36 157.5 209 44.0
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.7e-36 157.1 222 39.6
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 2.2e-35 155.2 509 28.5
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.2e-35 155.2 335 33.7
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 3.8e-32 144.4 580 26.6
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 4.4e-28 131.0 513 23.8
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 7.4e-28 130.2 210 40.0
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.7e-19 102.4 164 34.1
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 6.5e-16 90.5 110 36.4
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.3e-12 78.2 150 38.0
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.4e-10 72.8 72 45.8
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 2.0e-09 68.9 76 51.3
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 1.0e-08 66.6 190 29.5
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.2e-06 59.7 90 41.1


User provided reference genes

Program Settings