Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 2446.0 1315 100.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1273.5 1321 52.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1208.7 1310 52.1
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1200.3 1303 52.3
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1183.7 1325 50.4
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1182.9 1320 51.1
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1175.2 1318 50.3
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1174.1 1318 49.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1171.8 1319 50.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1171.0 1318 49.2
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1170.2 1318 50.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1166.0 1317 49.4
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1165.6 1322 50.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1157.1 1304 50.2
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1152.1 1318 49.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1151.3 1318 48.8
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1148.7 1327 49.4
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1147.9 1326 49.2
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1145.6 1318 49.3
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1145.2 1318 48.9
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1144.0 1317 49.1
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1141.3 1317 48.7
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1139.4 1319 51.0
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1131.7 1327 49.7
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1130.9 1320 48.9
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1130.9 1318 48.7
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1126.3 1318 48.0
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1125.2 1325 48.7
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1124.0 1318 48.0
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1123.2 1318 49.3
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1116.3 1317 47.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1115.5 1317 48.7
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1113.6 1319 50.1
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1112.4 1317 48.3
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1111.3 1324 49.5
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1109.4 1319 50.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1108.6 1317 48.1
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1108.2 1317 47.5
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1107.0 1319 48.4
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1102.4 1341 48.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1102.0 1317 47.2
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1101.7 1321 48.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1099.0 1333 48.7
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1098.6 1333 48.7
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1097.8 1317 47.8
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1097.4 1318 47.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1094.7 1360 47.8
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1094.7 1317 47.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1093.6 1365 47.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1093.6 1321 48.3
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1087.8 1345 47.7
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1085.1 1304 48.7
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1081.6 1444 45.4
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1081.2 1339 46.7
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1079.7 1317 47.2
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1078.5 1374 45.5
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1077.4 1320 47.6
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 9.0e-312 1074.3 1319 48.1
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 1.3e-308 1063.5 1317 47.0
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 3.2e-307 1058.9 1318 46.7
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 2.7e-306 1055.8 1320 47.0
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 8.6e-305 1050.8 1550 42.5
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 7.3e-304 1047.7 1322 48.3
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 1.4e-302 1043.5 1320 47.0
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 4.0e-302 1042.0 1329 48.2
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 6.8e-302 1041.2 1329 48.2
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 6.4e-300 1034.6 1316 46.3
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 6.4e-300 1034.6 1306 46.9
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.6e-296 1021.5 1318 44.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.4e-294 1016.9 1261 47.3
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 5.2e-294 1015.0 1318 46.0
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 5.2e-294 1015.0 1332 45.8
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 4.4e-293 1011.9 1309 45.9
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 3.9e-289 998.8 1212 47.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.2e-287 991.5 1315 45.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.4e-284 981.5 1254 44.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 1.3e-279 967.2 1373 45.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 3.4e-277 959.1 1211 45.8
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 3.2e-275 952.6 1402 42.7
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.9e-265 919.1 1251 44.4
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.0e-229 800.4 1260 39.2
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.1e-206 724.9 1059 41.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.1e-203 714.9 761 52.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.8e-184 649.4 759 46.9
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.3e-180 638.3 743 47.1
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 6.0e-173 612.8 902 40.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.6e-171 605.5 894 43.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 9.6e-171 605.5 1057 38.0
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.0e-168 597.8 767 44.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 3.4e-168 597.0 1393 34.2
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 7.6e-168 595.9 721 46.7
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.6e-152 544.3 1025 36.1
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.2e-151 541.2 631 50.1
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 8.4e-151 539.3 669 48.3
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-150 538.9 631 49.9
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.4e-150 538.5 1100 34.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.4e-150 538.5 1371 32.3
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-147 528.5 713 42.5
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 5.6e-147 526.6 759 42.3
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-145 520.4 594 47.1
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-145 520.4 594 47.1
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.2e-143 514.6 558 52.9
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 8.4e-143 512.7 1345 31.2
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.8e-138 497.7 635 46.5
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 7.9e-125 453.0 1337 29.0
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.6e-120 438.0 744 40.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 3.2e-118 431.0 350 64.9
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 7.2e-118 429.9 594 45.8
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.3e-116 424.9 294 72.4
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.0e-115 421.8 355 62.0
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.4e-108 399.1 241 81.7
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.3e-105 387.1 232 83.6
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.8e-103 380.9 264 73.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 2.5e-102 378.3 381 55.6
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.2e-102 377.5 430 50.0
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.2e-99 369.4 223 82.1
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.1e-86 326.2 187 84.5
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.8e-83 313.9 225 72.4
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.0e-80 305.4 535 39.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 2.9e-66 258.5 458 38.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.0e-60 238.0 509 34.8
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 8.4e-58 230.3 328 43.3
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.7e-56 225.3 126 88.1
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.1e-49 203.4 140 76.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.3e-46 190.7 139 74.1
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 2.6e-43 182.2 227 41.0
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 5.4e-41 174.5 394 30.5
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 5.1e-39 167.9 169 54.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 6.9e-36 157.5 87 90.8
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.7e-32 145.6 106 72.6
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.4e-28 133.3 72 84.7
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.2e-25 122.1 163 42.3
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.7e-24 119.0 410 25.6
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.7e-21 108.6 100 60.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 4.8e-21 108.2 64 82.8
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 3.8e-18 98.6 64 71.9
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 4.2e-17 95.1 106 52.8
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 3.3e-14 85.5 114 40.4
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 4.8e-13 81.6 53 73.6
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 3.2e-09 68.9 63 61.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 7.9e-08 64.3 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.0e-07 63.9 56 66.1
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-07 63.2 138 34.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 3.0e-07 62.4 208 29.3
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.7e-06 58.2 33 84.8


User provided reference genes

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