Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 4325.4 2225 100.0
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 3305.4 2225 76.5
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2369.7 2168 59.0
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2174.1 2234 53.5
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2149.0 2133 54.7
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 1908.6 2294 48.4
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1654.0 2140 45.1
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1651.7 2234 44.1
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1568.5 2228 42.9
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1321.6 2160 39.1
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1202.6 2234 36.3
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1200.7 2237 35.1
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1195.3 2206 35.7
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1195.3 2129 36.8
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1191.0 2232 36.2
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1188.3 2210 36.1
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1187.9 2242 35.2
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1186.4 2140 36.9
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1186.0 2145 36.2
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1185.6 2183 36.3
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1181.8 2153 36.3
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1180.2 2126 36.5
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1179.1 2142 35.9
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1179.1 2143 36.2
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1179.1 2139 36.9
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1177.9 2140 35.9
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1173.3 2122 36.3
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1169.5 2144 36.4
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1167.9 2145 36.0
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 2218 35.2
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1165.2 2143 35.8
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 2212 35.3
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1163.3 2138 36.7
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1160.2 2136 36.1
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1159.8 2157 36.0
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1159.4 2145 36.1
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1159.1 2191 35.5
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1157.1 2157 36.1
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1152.5 2122 36.0
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1150.6 2221 35.4
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 2157 35.7
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1149.0 2155 35.8
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1148.3 2170 36.0
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1147.5 2135 35.3
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1144.8 2155 35.9
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1143.3 2134 35.1
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1142.1 2205 35.3
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 2213 35.4
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 2215 35.3
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1140.2 2140 34.8
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1139.4 2149 35.3
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1139.4 2132 35.2
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2138 35.4
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1137.9 2170 36.1
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1134.0 2197 34.7
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1131.3 2118 36.0
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1129.0 2140 35.4
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1128.6 2135 34.9
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1127.5 2176 35.7
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1127.5 2151 35.4
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1125.2 2138 35.4
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1125.2 2142 35.3
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1124.8 2152 35.3
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1123.6 2141 35.2
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1120.1 2145 34.7
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1119.0 2127 34.9
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1119.0 2124 35.6
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1118.6 2150 35.4
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1118.2 2147 35.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1117.4 2165 35.0
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1117.1 2215 33.8
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1117.1 2134 35.6
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1115.9 2136 34.6
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1114.4 2145 35.4
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 0.0e+00 1110.5 2632 32.8
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1110.1 2195 34.6
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1109.0 2135 35.3
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1107.8 2192 34.5
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1106.3 2134 34.9
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1105.9 2184 34.4
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1103.6 2268 34.1
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1102.0 2219 34.2
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1099.0 2150 35.3
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1098.2 2119 35.5
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1094.0 2146 34.4
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1092.8 2219 34.2
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1091.6 2217 33.9
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1090.1 2206 34.5
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1085.9 2127 34.5
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1081.6 2133 34.7
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1081.2 2133 34.4
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1080.9 2139 34.2
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1080.1 2185 34.2
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 1078.9 2129 34.7
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1076.6 2132 34.9
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1075.8 2131 34.6
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 3.0e-311 1072.8 2155 34.7
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 6.1e-311 1072.0 2134 34.9
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 6.1e-311 1072.0 2232 33.8
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 2.3e-310 1070.1 2133 34.6
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 3.0e-310 1069.7 2132 35.0
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 6.7e-310 1068.5 2177 33.4
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 2.0e-309 1067.0 2133 34.6
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 2.2e-308 1063.5 2297 33.1
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 1.6e-306 1057.4 2203 33.8
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 1.6e-303 1047.3 2131 34.1
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.4e-302 1044.3 2308 32.8
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 2.6e-301 1040.0 2142 34.0
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.8e-300 1036.6 2178 33.9
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 4.8e-300 1035.8 2124 33.8
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 3.1e-299 1033.1 2139 33.8
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 4.1e-299 1032.7 2139 33.9
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 3.6e-295 1019.6 2122 34.1
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 1.4e-294 1017.7 2122 34.0
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 3.0e-294 1016.5 2131 33.7
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 2.6e-293 1013.4 2131 33.6
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 3.7e-292 1009.6 2120 33.7
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 1.9e-288 997.3 2131 33.7
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 5.4e-259 899.4 2148 32.0
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.5e-256 891.3 2160 31.4
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 1.6e-234 818.1 1480 37.6
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 4.8e-231 806.6 1275 38.3
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.8e-222 778.1 1798 33.0
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.2e-219 767.3 2126 29.4
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 1.7e-212 745.0 1398 36.2
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.6e-210 737.3 1359 36.1
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.0e-197 694.9 1298 36.4
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 5.2e-193 680.2 1297 35.4
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.4e-190 672.2 1334 35.5
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.5e-184 649.8 1766 30.7
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 4.9e-183 647.1 1786 29.7
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 8.3e-175 619.8 1844 29.0
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.8e-174 618.6 1313 34.3
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.5e-160 572.4 1267 33.0
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 5.2e-153 547.4 1411 31.4
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.0e-148 531.6 2021 25.7
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 3.8e-143 514.6 898 36.0
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.4e-135 487.3 823 37.7
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.2e-133 483.0 823 36.8
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 1.7e-132 479.2 825 36.7
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 2.1e-130 472.2 2336 25.5
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 2.4e-126 458.8 1041 34.4
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 5.1e-116 424.5 790 35.4
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 1.3e-111 409.8 899 34.3
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 3.3e-99 368.6 904 30.3
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 2.6e-96 359.0 633 37.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 2.4e-89 335.9 1293 27.1
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 7.5e-83 314.3 391 43.2
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 2.2e-82 312.8 489 39.7
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 3.1e-81 308.9 1957 23.6
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.0e-77 294.3 242 56.6
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 4.0e-76 292.0 309 46.9
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 4.1e-73 282.0 308 46.8
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 2.9e-71 275.8 302 47.0
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 4.4e-67 261.9 2225 21.4
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 5.6e-62 245.0 385 39.0
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.5e-59 236.9 245 48.2
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.5e-54 220.3 2214 21.0
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.2e-51 210.7 2186 21.0
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 1.6e-45 190.3 237 42.2
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 1.1e-44 187.6 319 36.4
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.5e-40 172.6 2167 20.0
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 1.3e-39 170.6 178 44.4
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.6e-39 168.3 2203 20.7
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.5e-38 167.2 1277 21.6
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.5e-38 164.5 2195 20.7
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 8.4e-34 151.4 482 27.6
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 1.2e-27 131.0 142 45.1
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 8.7e-23 114.8 254 33.1
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.1e-22 114.4 90 55.6
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 2.1e-21 110.2 158 39.9
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.2e-19 104.4 75 62.7
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 2.9e-18 99.8 68 61.8
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 4.9e-18 99.0 147 38.1
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 3.2e-17 96.3 1553 21.3
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 2.3e-15 90.1 121 38.8
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 3.9e-15 89.4 69 58.0
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 9.9e-11 74.7 248 27.4
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 8.4e-10 71.6 130 34.6
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.1e-09 71.2 45 68.9
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 8.7e-07 61.6 40 67.5
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 2.5e-06 60.1 186 26.9


User provided reference genes

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