Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-105 385.6 184 100.0
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.3e-91 339.0 217 77.4
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-90 334.3 217 77.4
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.1e-85 320.1 177 88.7
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-85 319.7 217 74.7
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-80 302.8 202 75.2
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.0e-75 285.0 185 77.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.2e-71 273.5 188 71.8
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 6.6e-70 267.7 184 73.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-68 263.5 159 83.0
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-68 263.1 182 70.9
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-68 262.3 217 64.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.1e-68 260.8 184 71.7
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 1.4e-56 223.4 154 71.4
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 1.4e-35 153.7 93 82.8
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-32 144.1 101 70.3
Pp3c19_11510 Physcomitrium patens HOM05D004663 ORTHO05D312375 1.6e-31 140.2 107 65.4
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.3e-30 136.3 205 38.5
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.0e-30 136.0 218 37.6
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 6.7e-30 134.8 194 37.6
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 8.7e-30 134.4 198 38.4
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.1e-29 134.0 198 38.4
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.5e-29 133.7 197 37.6
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.5e-29 132.9 199 38.7
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 3.3e-29 132.5 191 39.8
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 4.3e-29 132.1 191 39.3
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 4.3e-29 132.1 197 37.6
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 5.7e-29 131.7 199 36.2
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 7.4e-29 131.3 187 38.0
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 7.4e-29 131.3 191 39.3
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 9.7e-29 131.0 197 38.1
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 9.7e-29 131.0 218 34.9
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 9.7e-29 131.0 198 38.4
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.3e-28 130.6 213 35.7
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.3e-28 130.6 213 36.6
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.8e-28 129.4 198 37.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.8e-28 129.4 213 34.7
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 2.8e-28 129.4 191 37.7
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 3.7e-28 129.0 213 33.8
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.7e-28 129.0 204 35.8
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 3.7e-28 129.0 197 36.5
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.7e-28 129.0 197 36.5
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 3.7e-28 129.0 197 36.5
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 6.3e-28 128.3 203 36.9
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 6.3e-28 128.3 203 36.9
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 6.3e-28 128.3 213 34.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 6.3e-28 128.3 198 37.4
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 6.3e-28 128.3 199 35.7
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 8.2e-28 127.9 187 39.0
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 8.2e-28 127.9 187 38.5
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 8.2e-28 127.9 204 36.3
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.2e-28 127.9 203 35.5
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.1e-27 127.5 197 36.5
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.1e-27 127.5 175 39.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 1.1e-27 127.5 188 38.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.1e-27 127.5 190 38.4
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.4e-27 127.1 189 38.1
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.4e-27 127.1 197 37.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.4e-27 127.1 187 38.5
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 1.8e-27 126.7 187 36.9
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.8e-27 126.7 184 38.6
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 2.4e-27 126.3 187 36.9
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.4e-27 126.3 198 33.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 3.1e-27 125.9 187 38.5
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 4.1e-27 125.6 189 38.1
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 4.1e-27 125.6 198 37.4
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.1e-27 125.6 207 33.8
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 5.3e-27 125.2 215 36.3
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 5.3e-27 125.2 193 38.3
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 5.3e-27 125.2 187 37.4
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 5.3e-27 125.2 192 37.0
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.3e-27 125.2 187 35.8
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 6.9e-27 124.8 185 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 9.0e-27 124.4 204 35.3
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 9.0e-27 124.4 190 37.4
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 9.0e-27 124.4 189 37.0
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 9.0e-27 124.4 203 33.5
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.2e-26 124.0 222 34.2
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.2e-26 124.0 198 36.9
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.2e-26 124.0 190 36.3
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.2e-26 124.0 198 36.4
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 1.5e-26 123.6 189 38.1
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.5e-26 123.6 187 36.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.0e-26 123.2 190 37.4
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.0e-26 123.2 190 37.4
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.0e-26 123.2 190 37.4
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.0e-26 123.2 197 35.0
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 2.6e-26 122.9 187 38.5
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 2.6e-26 122.9 187 38.5
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 2.6e-26 122.9 187 38.5
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.6e-26 122.9 187 38.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.6e-26 122.9 197 35.5
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 3.4e-26 122.5 187 37.4
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 3.4e-26 122.5 187 38.5
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 4.5e-26 122.1 187 37.4
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.5e-26 122.1 233 33.0
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 5.9e-26 121.7 190 37.4
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 5.9e-26 121.7 187 36.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 7.7e-26 121.3 190 37.4
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 2.2e-25 119.8 187 36.4
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.2e-25 119.8 187 37.4
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 2.2e-25 119.8 187 37.4
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.2e-25 119.8 187 35.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.2e-25 119.8 177 36.7
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.9e-25 119.4 176 37.5
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.9e-25 119.4 187 36.4
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 5.0e-25 118.6 221 33.9
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 8.5e-25 117.9 213 33.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.4e-24 117.1 189 34.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 4.2e-24 115.5 185 34.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.2e-24 115.5 175 36.6
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 7.2e-24 114.8 169 36.1
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.2e-23 114.0 185 36.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.6e-23 113.6 176 36.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 2.1e-23 113.2 174 37.9
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.7e-23 112.8 238 31.5
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 4.6e-23 112.1 192 33.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 6.1e-23 111.7 165 35.8
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 7.9e-23 111.3 174 34.5
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.0e-22 110.9 174 34.5
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 3.9e-22 109.0 185 34.6
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 8.8e-22 107.8 187 32.6
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 2.0e-21 106.7 179 34.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.3e-21 105.9 167 35.3
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.3e-21 105.9 57 87.7
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 4.3e-21 105.5 189 32.3
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 5.7e-21 105.1 243 28.8
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.8e-19 100.1 160 35.6
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 5.0e-17 92.0 143 35.7
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.6e-15 85.9 168 29.8
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 6.1e-15 85.1 87 46.0
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 7.9e-15 84.7 82 48.8
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.1e-14 82.0 95 40.0
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.1e-14 82.0 95 40.0
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 8.8e-14 81.3 228 28.5
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 7.4e-13 78.2 80 46.2
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 9.7e-13 77.8 78 44.9
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.3e-12 77.4 88 42.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.1e-11 74.3 80 43.8
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 3.1e-11 72.8 80 43.8
Pp3c5_1400 Physcomitrium patens HOM05D004663 ORTHO05D315845 1.2e-10 70.9 39 82.1
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.5e-10 69.3 83 41.0
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.0e-09 67.8 118 35.6
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 6.5e-09 65.1 66 48.5
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 6.5e-09 65.1 71 47.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.0e-06 57.8 155 27.7
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.0e-06 57.8 45 57.8


User provided reference genes

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