Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.T127006 Populus trichocarpa HOM05D001296 ORTHO05D003826 2.7e-58 228.4 113 100.0
Potri.003G200450 Populus trichocarpa HOM05D001296 ORTHO05D003826 1.7e-55 219.2 113 97.3
Potri.001G025500 Populus trichocarpa HOM05D001296 ORTHO05D003826 9.4e-43 176.8 107 80.4
Duzib114G0332 Durio zibethinus HOM05D001296 ORTHO05D003826 3.4e-32 141.7 107 70.1
Duzib114G1000 Durio zibethinus HOM05D001296 ORTHO05D003826 3.4e-32 141.7 107 70.1
Potri.001G179300 Populus trichocarpa HOM05D001296 ORTHO05D003826 9.8e-32 140.2 96 74.0
Thecc.10G166600 Theobroma cacao HOM05D001296 ORTHO05D003826 9.2e-30 133.7 107 64.5
Ciclev10005821m.g Citrus clementina HOM05D001296 ORTHO05D003826 4.5e-29 131.3 107 60.7
Atru.chr12.1363 Acer truncatum HOM05D001296 ORTHO05D003826 5.9e-29 131.0 107 58.9
QL04p014286 Quercus lobata HOM05D001296 ORTHO05D003826 1.0e-28 130.2 107 58.9
COL.COLO4_21454 Corchorus olitorius HOM05D001296 ORTHO05D003826 6.6e-28 127.5 109 62.4
FAN06G3594 Fragaria x ananassa HOM05D001296 ORTHO05D003826 8.6e-28 127.1 107 57.9
FvH4_7g02710 Fragaria vesca HOM05D001296 ORTHO05D003826 1.1e-27 126.7 107 57.0
FAN03G2947 Fragaria x ananassa HOM05D001296 ORTHO05D003826 1.1e-27 126.7 107 58.9
FAN01G3004 Fragaria x ananassa HOM05D001296 ORTHO05D003826 4.3e-27 124.8 107 57.9
Thhalv10011060m.g Eutrema salsugineum HOM05D001296 ORTHO05D003826 5.6e-27 124.4 107 57.0
RcHm_v2.0_Chr1g0321871 Rosa chinensis HOM05D001296 ORTHO05D003826 7.3e-27 124.0 107 57.9
TWI38G1653 Tripterygium wilfordii HOM05D001296 ORTHO05D003826 7.3e-27 124.0 107 61.7
RcHm_v2.0_Chr1g0321951 Rosa chinensis HOM05D001296 ORTHO05D003826 8.0e-26 120.6 107 56.1
BcaC02g09065 Brassica carinata HOM05D001296 ORTHO05D003826 3.0e-25 118.6 107 54.2
Dinv09257 Davidia involucrata HOM05D001296 ORTHO05D003826 5.2e-25 117.9 107 57.9
Carub.0005s2111 Capsella rubella HOM05D001296 ORTHO05D003826 6.8e-25 117.5 107 52.3
CARHR164390 Cardamine hirsuta HOM05D001296 ORTHO05D003826 2.0e-24 115.9 107 54.2
BcaB02g08445 Brassica carinata HOM05D001296 ORTHO05D003826 3.4e-24 115.2 107 52.3
A04p05340 Brassica napus HOM05D001296 ORTHO05D003826 7.5e-24 114.0 107 52.3
THA.LOC104824188 Tarenaya hassleriana HOM05D001296 ORTHO05D003826 1.7e-23 112.8 107 53.3
AL5G35540 Arabidopsis lyrata HOM05D001296 ORTHO05D003826 2.9e-23 112.1 107 50.5
Prupe.2G032100 Prunus persica HOM05D001296 ORTHO05D003826 2.9e-23 112.1 107 53.3
TAR633G1527 Trochodendron aralioides HOM05D001296 ORTHO05D003826 3.7e-23 111.7 107 49.5
C04p38030 Brassica napus HOM05D001296 ORTHO05D003826 8.3e-23 110.5 118 49.2
arahy.Tifrunner.gnm1.ann1.2M3JSP Arachis hypogaea HOM05D001296 ORTHO05D003826 1.4e-22 109.8 109 50.5
Rhsim03G0008600 Rhododendron simsii HOM05D001296 ORTHO05D003826 1.4e-22 109.8 107 53.3
AT3G54490 Arabidopsis thaliana HOM05D001296 ORTHO05D003826 4.1e-22 108.2 112 47.3
BolC4t25376H Brassica oleracea HOM05D001296 ORTHO05D003826 5.4e-22 107.8 120 47.5
Lalb_Chr04g0264031 Lupinus albus HOM05D001296 ORTHO05D003826 7.0e-22 107.5 113 52.2
Sp5g07930 Schrenkiella parvula HOM05D001296 ORTHO05D003826 7.0e-22 107.5 113 49.6
EL10Ac2g02825 Beta vulgaris HOM05D001296 ORTHO05D003826 9.2e-22 107.1 104 51.9
arahy.Tifrunner.gnm1.ann1.40ITVF Arachis hypogaea HOM05D001296 ORTHO05D003826 1.2e-21 106.7 109 48.6
BraA04t16234Z Brassica rapa HOM05D001296 ORTHO05D003826 1.2e-21 106.7 126 45.2
MD07G1036700 Malus domestica HOM05D001296 ORTHO05D003826 1.6e-21 106.3 107 52.3
vmacro07932 Vaccinium macrocarpon HOM05D001296 ORTHO05D003826 5.9e-21 104.4 107 52.3
GSVIVG01000665001 Vitis vinifera HOM05D001296 ORTHO05D000008 5.9e-21 104.4 107 51.4
Actinidia02193 Actinidia chinensis HOM05D001296 ORTHO05D003826 1.7e-20 102.8 107 48.6
Hund24630 Selenicereus undatus HOM05D001296 ORTHO05D003826 2.3e-20 102.4 107 45.8
AUR62037204 Chenopodium quinoa HOM05D001296 ORTHO05D003826 6.6e-20 100.9 104 48.1
AUR62030335 Chenopodium quinoa HOM05D001296 ORTHO05D003826 1.5e-19 99.8 107 46.7
AUR62031991 Chenopodium quinoa HOM05D001296 ORTHO05D003826 1.5e-19 99.8 107 46.7
Sc13g0001300 Simmondsia chinensis HOM05D001296 ORTHO05D003826 2.5e-19 99.0 107 47.7
Lj2A395G23 Lonicera japonica HOM05D001296 ORTHO05D003826 4.3e-19 98.2 105 44.8
CARHR167280 Cardamine hirsuta HOM05D001296 ORTHO05D003826 5.6e-19 97.8 107 46.7
Dinv08499 Davidia involucrata HOM05D001296 ORTHO05D003826 5.6e-19 97.8 107 47.7
Cpa.g.sc5.204 Carica papaya HOM05D001296 ORTHO05D003826 7.3e-19 97.4 107 46.7
Cfa016691 Carpinus fangiana HOM05D001296 ORTHO05D003826 9.5e-19 97.1 107 43.9
HanXRQChr17g0563991 Helianthus annuus HOM05D001296 ORTHO05D003826 9.5e-19 97.1 112 45.5
Eucgr.K01636 Eucalyptus grandis HOM05D001296 ORTHO05D003826 1.6e-18 96.3 107 44.9
Manes.08G057400 Manihot esculenta HOM05D001296 ORTHO05D003826 2.1e-18 95.9 107 45.8
ClCG10G016030 Citrullus lanatus HOM05D001296 ORTHO05D003826 2.8e-18 95.5 107 44.9
Glyma.11G154500 Glycine max HOM05D001296 ORTHO05D003826 2.8e-18 95.5 108 46.3
Nn2g14902 Nelumbo nucifera HOM05D001296 ORTHO05D003826 2.8e-18 95.5 110 47.3
MELO3C009776.2 Cucumis melo HOM05D001296 ORTHO05D003826 4.7e-18 94.7 107 43.9
AL5G38570 Arabidopsis lyrata HOM05D001296 ORTHO05D003826 6.2e-18 94.4 107 43.0
AT3G57080 Arabidopsis thaliana HOM05D001296 ORTHO05D003826 6.2e-18 94.4 107 43.9
Sp5g05500 Schrenkiella parvula HOM05D001296 ORTHO05D003826 6.2e-18 94.4 107 44.9
CsaV3_3G040420 Cucumis sativus L. HOM05D001296 ORTHO05D003826 8.0e-18 94.0 107 43.9
FvH4_6g25210 Fragaria vesca HOM05D001296 ORTHO05D003826 8.0e-18 94.0 107 43.0
Aa31LG10G11320 Aethionema arabicum HOM05D001296 ORTHO05D003826 1.1e-17 93.6 107 43.9
arahy.Tifrunner.gnm1.ann1.JAEG6E Arachis hypogaea HOM05D001296 ORTHO05D003826 1.1e-17 93.6 107 43.9
CiPaw.09G045400 Carya illinoinensis HOM05D001296 ORTHO05D003826 1.1e-17 93.6 107 43.0
arahy.Tifrunner.gnm1.ann1.3QF1KH Arachis hypogaea HOM05D001296 ORTHO05D003826 1.4e-17 93.2 107 43.9
QL07p008705 Quercus lobata HOM05D001296 ORTHO05D003826 1.4e-17 93.2 107 43.0
Sed0005510 Sechium edule HOM05D001296 ORTHO05D003826 1.4e-17 93.2 107 43.0
Sed0018242 Sechium edule HOM05D001296 ORTHO05D003826 1.4e-17 93.2 107 42.1
Thecc.05G140300 Theobroma cacao HOM05D001296 ORTHO05D003826 1.4e-17 93.2 107 43.0
Atru.chr1.1488 Acer truncatum HOM05D001296 ORTHO05D003826 1.8e-17 92.8 107 43.9
DCAR_020548 Daucus carota HOM05D001296 ORTHO05D003826 2.3e-17 92.4 107 41.1
FAN14G4429 Fragaria x ananassa HOM05D001296 ORTHO05D003826 2.3e-17 92.4 107 42.1
Gohir.D09G115442 Gossypium hirsutum HOM05D001296 ORTHO05D003826 2.3e-17 92.4 107 43.0
MBI11_g32500_MAGBIO Magnolia biondii HOM05D001296 ORTHO05D003826 2.3e-17 92.4 108 44.4
Aa31LG10G12010 Aethionema arabicum HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.0
EL10Ac3g07213 Beta vulgaris HOM05D001296 ORTHO05D003826 3.1e-17 92.0 102 48.0
A09p50010 Brassica napus HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.0
BraA09t40451Z Brassica rapa HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.0
CiPaw.10G038900 Carya illinoinensis HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.9
Ciclev10021999m.g Citrus clementina HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.9
Haze_19718 Corylus avellana HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 43.0
Thhalv10006218m.g Eutrema salsugineum HOM05D001296 ORTHO05D003826 3.1e-17 92.0 107 42.1
CSS0028523 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 43.0
CSS0029488 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 43.0
Duzib128G1037 Durio zibethinus HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 41.1
Gohir.A09G118700 Gossypium hirsutum HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 43.0
PSO384G3462 Papaver somniferum HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 44.9
Potri.016G038500 Populus trichocarpa HOM05D001296 ORTHO05D003826 4.0e-17 91.7 107 41.1
RcHm_v2.0_Chr3g0472601 Rosa chinensis HOM05D001296 ORTHO05D003826 4.0e-17 91.7 88 53.4
BcaC07g40024 Brassica carinata HOM05D001296 ORTHO05D003826 5.2e-17 91.3 107 43.0
C08p32420 Brassica napus HOM05D001296 ORTHO05D003826 5.2e-17 91.3 107 43.0
BolC8t50856H Brassica oleracea HOM05D001296 ORTHO05D003826 5.2e-17 91.3 107 43.0
Lj3g0017099 Lotus japonicus HOM05D001296 ORTHO05D003826 5.2e-17 91.3 107 45.8
AT2G41340 Arabidopsis thaliana HOM05D001296 ORTHO05D003826 6.8e-17 90.9 107 42.1
Migut.B01217 Erythranthe guttata HOM05D001296 ORTHO05D003826 6.8e-17 90.9 109 47.7
THA.LOC104803274 Tarenaya hassleriana HOM05D001296 ORTHO05D003826 6.8e-17 90.9 107 43.9
Ah.13g076980 Amaranthus hybridus HOM05D001296 ORTHO05D003826 8.9e-17 90.5 107 44.9
Duzib093G1916 Durio zibethinus HOM05D001296 ORTHO05D003826 8.9e-17 90.5 107 43.9
QL07p008420 Quercus lobata HOM05D001296 ORTHO05D003826 8.9e-17 90.5 107 42.1
AL4G39330 Arabidopsis lyrata HOM05D001296 ORTHO05D003826 2.0e-16 89.4 107 42.1
Lalb_Chr22g0357351 Lupinus albus HOM05D001296 ORTHO05D003826 2.0e-16 89.4 107 43.0
Actinidia09272 Actinidia chinensis HOM05D001296 ORTHO05D003826 2.6e-16 89.0 107 41.1
BcaC07g40048 Brassica carinata HOM05D001296 ORTHO05D003826 2.6e-16 89.0 107 43.0
RcHm_v2.0_Chr2g0125071 Rosa chinensis HOM05D001296 ORTHO05D003826 2.6e-16 89.0 107 42.1
Actinidia32316 Actinidia chinensis HOM05D001296 ORTHO05D003826 3.4e-16 88.6 107 41.1
Manes.09G007600 Manihot esculenta HOM05D001296 ORTHO05D003826 3.4e-16 88.6 107 40.2
PSO339G6570 Papaver somniferum HOM05D001296 ORTHO05D003826 3.4e-16 88.6 107 43.9
Psat3g077800 Pisum sativum HOM05D001296 ORTHO05D003826 3.4e-16 88.6 107 42.1
Sabra16G0040300 Salix brachista HOM05D001296 ORTHO05D003826 3.4e-16 88.6 106 41.5
Sabra16G0045000 Salix brachista HOM05D001296 ORTHO05D003826 3.4e-16 88.6 106 41.5
Sabra16G0045100 Salix brachista HOM05D001296 ORTHO05D003826 3.4e-16 88.6 106 41.5
Sp4g23630 Schrenkiella parvula HOM05D001296 ORTHO05D003826 3.4e-16 88.6 107 42.1
Carub.0005s2389 Capsella rubella HOM05D001296 ORTHO05D003826 4.4e-16 88.2 107 42.1
ECA248G2693 Erigeron canadensis HOM05D001296 ORTHO05D003826 4.4e-16 88.2 107 40.2
FAN02G0156 Fragaria x ananassa HOM05D001296 ORTHO05D003826 4.4e-16 88.2 107 42.1
FAN09G0772 Fragaria x ananassa HOM05D002247 ORTHO05D002659 4.4e-16 88.2 107 42.1
HanXRQChr09g0259961 Helianthus annuus HOM05D001296 ORTHO05D003826 4.4e-16 88.2 107 40.2
CiPaw.03G078900 Carya illinoinensis HOM05D001296 ORTHO05D003826 5.8e-16 87.8 107 40.2
Gorai.006G133300 Gossypium raimondii HOM05D001296 ORTHO05D003826 5.8e-16 87.8 108 42.6
Lj1g0025299 Lotus japonicus HOM05D001296 ORTHO05D003826 5.8e-16 87.8 107 40.2
Peaxi162Scf00502g00082 Petunia axillaris HOM05D001296 ORTHO05D003826 7.5e-16 87.4 107 42.1
TPR.G9316 Trifolium pratense HOM05D001296 ORTHO05D003826 7.5e-16 87.4 107 41.1
CANSAT64G2108 Cannabis sativa HOM05D001296 ORTHO05D003826 9.8e-16 87.0 107 39.3
Hma1.2p1_0521F.1_g171480 Hydrangea macrophylla HOM05D001296 ORTHO05D003826 9.8e-16 87.0 107 43.0
Lalb_Chr14g0365901 Lupinus albus HOM05D001296 ORTHO05D003826 9.8e-16 87.0 107 43.9
Medtr7g090220 Medicago truncatula HOM05D001296 ORTHO05D003826 9.8e-16 87.0 107 40.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.7e-15 86.3 107 43.9
vmacro07817 Vaccinium macrocarpon HOM05D001296 ORTHO05D003826 1.7e-15 86.3 107 43.9
GSVIVG01033595001 Vitis vinifera HOM05D001296 ORTHO05D003826 1.7e-15 86.3 107 42.1
CAN.G1563.11 Capsicum annuum HOM05D001296 ORTHO05D003826 2.9e-15 85.5 107 41.1
Dinv09281 Davidia involucrata HOM05D001296 ORTHO05D003826 2.9e-15 85.5 78 57.7
Psat5g217600 Pisum sativum HOM05D001296 ORTHO05D003826 2.9e-15 85.5 112 40.2
PGSC0003DMG400010646 Solanum tuberosum HOM05D001296 ORTHO05D003826 2.9e-15 85.5 107 40.2
BcaC02g12896 Brassica carinata HOM05D001296 ORTHO05D003826 3.7e-15 85.1 107 38.3
C04p68940 Brassica napus HOM05D001296 ORTHO05D003826 3.7e-15 85.1 107 38.3
BolC4t28395H Brassica oleracea HOM05D001296 ORTHO05D003826 3.7e-15 85.1 107 38.3
Solyc04g040170.3 Solanum lycopersicum HOM05D001296 ORTHO05D003826 3.7e-15 85.1 107 40.2
Sopen04g009960 Solanum pennellii HOM05D001296 ORTHO05D003826 3.7e-15 85.1 107 40.2
ECA234G3519 Erigeron canadensis HOM05D001296 ORTHO05D003826 4.9e-15 84.7 107 43.0
Lsat_1_v5_gn_5_159481 Lactuca sativa HOM05D001296 ORTHO05D003826 8.3e-15 84.0 107 38.3
A04p31510 Brassica napus HOM05D001296 ORTHO05D003826 1.1e-14 83.6 107 38.3
BraA04t18608Z Brassica rapa HOM05D001296 ORTHO05D003826 1.1e-14 83.6 107 38.3
CDE11G1031 Ceratophyllum demersum HOM05D000020 ORTHO05D000904 1.1e-14 83.6 108 42.6
Nitab4.5_0008307g0010 Nicotiana tabacum HOM05D001296 ORTHO05D003826 1.1e-14 83.6 107 41.1
Glyma.03G129500 Glycine max HOM05D001296 ORTHO05D003826 1.4e-14 83.2 107 39.3
MD14G1084600 Malus domestica HOM05D001296 ORTHO05D003826 1.9e-14 82.8 107 38.3
RhsimUnG0219900 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.9e-14 82.8 107 42.1
HPP92_023101 Vanilla planifolia HOM05D001296 ORTHO05D003826 1.9e-14 82.8 108 39.8
Sopen01g041880 Solanum pennellii HOM05D001296 ORTHO05D003826 2.4e-14 82.4 107 39.3
Manes.04G165700 Manihot esculenta HOM05D001296 ORTHO05D003826 4.1e-14 81.6 107 45.8
Solyc01g098320.4 Solanum lycopersicum HOM05D001296 ORTHO05D003826 4.1e-14 81.6 107 39.3
MD00G1170800 Malus domestica HOM05D001296 ORTHO05D003826 7.0e-14 80.9 105 37.1
SHI28263 Sapria himalayana HOM05D001296 ORTHO05D003826 7.0e-14 80.9 109 42.2
Cc06_g18820 Coffea canephora HOM05D001296 ORTHO05D003826 9.2e-14 80.5 107 37.4
Phvul.005G029700 Phaseolus vulgaris HOM05D001296 ORTHO05D003826 1.2e-13 80.1 110 39.1
Peaxi162Scf00660g00117 Petunia axillaris HOM05D001296 ORTHO05D003826 1.6e-13 79.7 107 38.3
VMungo1080G0211 Vigna mungo HOM05D001296 ORTHO05D003826 1.6e-13 79.7 108 38.9
SGA_v2.0_scaffold105G30325 Striga asiatica HOM05D001296 ORTHO05D003826 2.7e-13 79.0 107 38.3
CSS0011207 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 4.6e-13 78.2 116 37.1
CSS0024715 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 7.8e-13 77.4 116 37.1
PGR142G0705 Punica granatum HOM05D001296 ORTHO05D003826 1.3e-12 76.6 107 38.3
TWI77G0613 Tripterygium wilfordii HOM05D001296 ORTHO05D003826 1.3e-12 76.6 107 40.2
Glyma.04G141500 Glycine max HOM05D001296 ORTHO05D003826 2.3e-12 75.9 108 39.8
Lsat_1_v5_gn_4_30101 Lactuca sativa HOM05D001296 ORTHO05D003826 2.3e-12 75.9 107 40.2
MSTRG.6383 Avicennia marina HOM05D001296 ORTHO05D003826 3.0e-12 75.5 107 37.4
CAN.G134.219 Capsicum annuum HOM05D001296 ORTHO05D003826 3.0e-12 75.5 107 37.4
VMungo1383G0914 Vigna mungo HOM05D001296 ORTHO05D003826 3.0e-12 75.5 107 35.5
Os11g0143400 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D003826 5.0e-12 74.7 107 39.3
Os12g0139500 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D003826 5.0e-12 74.7 107 39.3
DCAR_027954 Daucus carota HOM05D001296 ORTHO05D003826 6.6e-12 74.3 110 41.8
Glyma.19G131700 Glycine max HOM05D001296 ORTHO05D003826 8.6e-12 73.9 107 34.6
Phvul.001G125200 Phaseolus vulgaris HOM05D001296 ORTHO05D003826 1.5e-11 73.2 107 35.5
SalBow6G2362 Salvia bowleyana HOM05D001296 ORTHO05D003826 2.5e-11 72.4 107 38.3
Zm00001eb093130 Zea mays HOM05D001296 ORTHO05D003826 2.5e-11 72.4 108 40.7
Aqoxy2G00335 Aquilegia oxysepala HOM05D001296 ORTHO05D003826 3.3e-11 72.0 109 35.8
Nitab4.5_0003134g0160 Nicotiana tabacum HOM05D001296 ORTHO05D003826 5.6e-11 71.2 126 34.1
SGA_v2.0_scaffold96G28930 Striga asiatica HOM05D001296 ORTHO05D003826 9.5e-11 70.5 112 41.1
Ca_08405_v3 Cicer arietinum L. HOM05D001296 ORTHO05D003826 1.8e-09 66.2 106 35.8
Lj2C395G5 Lonicera japonica HOM05D001296 ORTHO05D003826 1.8e-09 66.2 92 39.1
Hma1.2p1_1251F.1_g270430 Hydrangea macrophylla HOM05D001296 ORTHO05D003826 1.5e-08 63.2 52 57.7
ATR0075G025 Amborella trichopoda HOM05D001296 ORTHO05D003826 5.8e-08 61.2 109 29.4
Migut.J01678 Erythranthe guttata HOM05D001296 ORTHO05D003826 2.9e-07 58.9 59 47.5
TPR.G22698 Trifolium pratense HOM05D001296 ORTHO05D410717 1.4e-06 56.6 63 42.9


User provided reference genes

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