Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.8e-199 697.6 338 100.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.0e-178 627.5 337 89.9
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.9e-177 624.8 352 87.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.9e-173 610.9 336 88.1
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.1e-168 596.7 343 84.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.4e-166 589.7 343 82.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.2e-165 586.6 336 81.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.2e-165 586.6 342 83.6
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.5e-163 577.8 344 82.0
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.7e-162 575.5 346 81.8
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.7e-162 575.5 343 81.0
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.6e-162 575.1 341 83.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.6e-162 574.7 338 80.2
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 7.9e-162 573.9 318 83.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 3.0e-161 572.0 343 80.5
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.3e-160 568.5 343 79.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.3e-160 568.2 319 84.0
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.8e-158 562.8 340 78.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.8e-158 562.8 332 80.7
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.4e-158 562.4 340 79.7
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.1e-158 562.0 338 78.7
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.1e-158 561.6 341 80.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.3e-158 561.2 340 79.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 5.3e-158 561.2 339 79.1
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 6.9e-158 560.8 337 79.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 9.1e-158 560.5 344 79.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.8e-156 555.1 339 78.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 5.0e-156 554.7 341 78.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.5e-155 552.4 341 76.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-155 552.0 341 76.0
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.2e-155 552.0 341 76.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.2e-155 551.6 311 83.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.2e-155 551.6 339 79.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.6e-154 549.7 311 82.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.1e-154 549.3 341 75.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.1e-154 549.3 341 75.7
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.7e-154 548.1 346 77.2
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.0e-153 547.0 336 78.3
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-153 546.6 333 78.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.8e-153 546.2 338 76.9
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.3e-153 545.8 337 77.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.3e-153 545.8 340 75.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.0e-153 545.4 343 75.5
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 6.7e-153 544.3 335 76.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 8.8e-153 543.9 341 74.5
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.8e-153 543.9 341 75.1
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.6e-152 542.3 343 78.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.6e-152 542.3 342 74.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.3e-152 542.0 333 77.8
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 5.7e-152 541.2 341 78.6
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.7e-152 541.2 331 78.2
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.7e-152 541.2 333 78.4
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.4e-152 540.8 337 76.3
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 7.4e-152 540.8 340 75.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.7e-151 539.7 347 76.1
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.7e-151 539.7 334 76.3
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 3.7e-151 538.5 342 76.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.8e-151 538.1 340 74.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.8e-151 538.1 339 76.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.8e-151 538.1 333 77.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 8.2e-151 537.3 339 75.5
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.4e-150 536.6 341 74.8
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.4e-150 536.6 338 75.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.8e-150 536.2 351 73.5
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 3.1e-150 535.4 341 75.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.2e-149 533.5 323 77.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.6e-149 533.1 343 75.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.6e-149 532.3 331 75.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 3.5e-149 531.9 331 75.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 4.5e-149 531.6 334 76.0
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 5.9e-149 531.2 337 77.2
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.3e-148 530.0 339 74.6
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 5.0e-148 528.1 323 76.5
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 8.5e-148 527.3 310 77.4
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.1e-147 526.9 345 75.4
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.5e-147 526.6 334 75.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.2e-147 525.4 323 76.5
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 4.2e-147 525.0 336 74.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 7.2e-147 524.2 338 74.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 7.2e-147 524.2 344 75.3
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.7e-146 522.3 341 76.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.0e-145 520.4 339 73.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-144 516.9 333 75.4
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.6e-144 515.8 337 73.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-144 515.4 333 75.4
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.8e-142 509.6 323 78.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.4e-142 509.2 337 73.0
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.4e-142 509.2 318 75.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.9e-141 504.6 316 78.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.9e-140 502.3 384 66.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.5e-139 499.2 339 69.6
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.2e-139 498.4 339 71.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.6e-138 496.5 318 73.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 3.6e-138 495.4 318 76.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.6e-138 495.4 338 70.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 5.2e-137 491.5 337 71.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.5e-136 490.0 320 72.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 5.7e-136 488.0 347 69.7
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.7e-135 485.3 338 70.4
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.3e-135 484.6 320 74.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.8e-134 483.0 286 78.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 4.1e-134 481.9 355 68.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 9.1e-134 480.7 345 68.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 3.5e-133 478.8 337 68.8
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 8.0e-130 467.6 266 83.5
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.0e-130 467.6 336 66.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.0e-129 467.2 359 64.9
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.3e-129 466.1 334 65.9
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.6e-128 462.6 341 68.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.6e-128 462.6 318 70.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.7e-128 461.5 306 69.9
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 8.3e-127 457.6 341 66.6
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-126 456.4 316 70.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-125 453.4 263 81.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.0e-124 450.7 319 64.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-122 443.7 247 86.2
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-121 439.9 315 65.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.0e-121 438.7 283 72.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.2e-120 437.2 276 74.6
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 9.8e-120 434.1 308 64.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.0e-116 422.5 315 62.9
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 5.8e-112 408.3 313 63.9
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.9e-110 403.3 313 60.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 3.2e-110 402.5 287 68.6
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.0e-108 395.2 403 52.6
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.5e-99 366.3 222 77.5
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.2e-95 353.2 336 56.2
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.1e-91 340.9 248 65.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.6e-91 337.8 226 67.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-90 337.4 256 64.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.6e-82 309.3 234 61.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.1e-81 306.2 301 52.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 9.6e-75 284.6 268 55.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.6e-72 276.6 304 49.0
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 3.4e-72 276.2 176 77.3
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.4e-71 271.9 169 75.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 5.1e-60 235.7 143 76.2
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.8e-57 227.3 180 65.0
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.2e-56 224.6 130 80.0
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.9e-49 198.7 125 75.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.1e-33 146.4 93 72.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.5e-32 142.9 171 49.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.4e-25 120.6 75 66.7
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 4.1e-25 119.8 64 84.4
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-22 110.9 77 66.2
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.2e-22 109.8 66 74.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.8e-18 97.1 80 65.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 4.8e-18 96.3 80 58.8
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.0e-16 90.9 55 72.7
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.0e-12 77.0 70 54.3
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 6.8e-12 75.9 233 25.3
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.7e-10 71.2 240 27.5
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.7e-10 70.1 46 67.4
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 3.1e-09 67.0 95 34.7
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-07 61.6 78 46.2
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 2.3e-07 60.8 213 26.3
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.9e-07 60.5 119 29.4
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 6.6e-07 59.3 204 29.4


User provided reference genes

Program Settings