Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 0.0e+00 1147.1 588 100.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 3.4e-269 931.4 634 79.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 7.4e-240 833.9 605 73.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.6e-239 832.8 580 75.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 9.0e-238 827.0 604 72.8
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.6e-237 825.5 598 72.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.5e-237 824.7 596 73.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.5e-236 820.5 503 82.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.9e-235 819.3 604 72.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 5.5e-235 817.8 584 73.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.6e-234 816.2 598 73.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.6e-234 816.2 598 73.1
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.1e-234 815.8 606 72.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.7e-234 815.5 588 73.6
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.4e-233 813.1 586 74.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.8e-233 812.8 606 70.6
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.0e-232 809.3 585 72.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.3e-232 808.1 589 72.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 7.4e-232 807.4 594 70.9
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 7.4e-232 807.4 602 70.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.2e-229 800.0 509 78.8
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.5e-229 799.7 609 70.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.0e-229 799.3 619 69.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.6e-229 798.9 583 73.1
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 4.5e-229 798.1 597 72.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 7.7e-229 797.3 505 80.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 7.7e-229 797.3 599 71.5
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.7e-229 797.3 585 71.3
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.3e-228 796.6 610 70.2
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.8e-228 795.0 612 68.8
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.4e-227 793.1 596 71.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 5.5e-227 791.2 607 70.2
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.6e-226 789.6 599 69.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.6e-226 788.5 605 69.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.0e-225 786.9 513 76.4
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.0e-225 785.4 585 72.3
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 6.7e-225 784.3 503 79.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.5e-224 783.1 586 70.6
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.4e-224 781.6 631 67.0
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 9.7e-224 780.4 596 70.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 6.3e-223 777.7 581 72.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.2e-223 777.3 585 70.9
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.4e-222 775.8 602 69.1
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.1e-222 775.0 505 78.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.6e-221 772.3 599 69.6
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 5.9e-221 771.2 602 67.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.8e-220 768.5 510 77.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 6.5e-220 767.7 596 70.0
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 8.5e-220 767.3 597 68.7
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-219 766.5 583 69.5
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 7.2e-219 764.2 595 69.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.4e-217 760.0 608 67.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.2e-217 758.1 592 67.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.7e-217 757.7 584 68.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.7e-217 757.7 564 70.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 8.8e-217 757.3 602 66.9
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.6e-216 755.7 592 65.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 3.3e-216 755.4 599 66.8
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.7e-216 754.6 503 74.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.2e-215 752.7 503 75.1
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.7e-215 751.9 609 66.2
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.8e-214 749.6 595 68.4
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.0e-214 747.7 603 66.8
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.2e-213 746.9 599 65.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-213 746.9 602 65.8
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.6e-213 746.5 602 65.8
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 5.9e-213 744.6 599 67.6
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.0e-212 743.8 585 66.5
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.3e-212 743.4 595 66.1
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.3e-212 743.4 607 67.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-212 743.0 602 66.3
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.9e-212 742.3 595 66.1
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 5.0e-212 741.5 597 65.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 5.0e-212 741.5 597 65.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.0e-212 741.5 596 69.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-211 740.3 531 73.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.1e-211 740.3 606 66.3
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 5.5e-211 738.0 508 73.0
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 7.2e-211 737.6 597 64.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 6.1e-210 734.6 610 65.9
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.2e-209 731.5 632 63.3
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 8.8e-209 730.7 672 61.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.4e-206 723.4 592 65.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 9.1e-206 720.7 477 74.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.2e-205 720.3 586 64.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 7.7e-205 717.6 539 70.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 6.1e-202 708.0 586 64.3
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 3.0e-201 705.7 581 65.1
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.2e-199 699.5 460 77.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 4.8e-199 698.4 592 65.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 6.3e-199 698.0 605 63.1
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 8.3e-199 697.6 580 64.7
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 5.0e-196 688.3 553 65.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.4e-193 680.2 654 59.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.7e-191 673.3 589 63.3
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.4e-190 668.3 603 60.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-188 664.1 576 62.3
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.6e-186 655.6 459 72.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.2e-184 650.6 602 57.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.9e-183 646.0 584 61.1
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.0e-174 614.8 486 68.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.0e-168 596.7 439 69.7
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.4e-167 591.7 559 57.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-166 589.7 523 61.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.6e-165 587.0 372 78.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-159 567.4 472 59.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.8e-140 503.8 584 52.1
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.5e-139 500.0 441 55.6
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.9e-134 483.8 345 71.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 4.6e-133 479.2 484 52.5
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.1e-130 470.3 450 52.2
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.6e-128 463.4 504 54.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.0e-127 461.5 520 48.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.7e-125 453.4 412 64.1
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 9.7e-123 444.9 420 61.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.2e-122 443.7 477 52.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.4e-121 441.0 462 55.2
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.3e-115 419.9 266 79.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.7e-106 391.0 489 45.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.1e-93 345.9 282 59.9
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 7.2e-86 322.4 204 77.0
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.4e-75 287.0 178 80.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.7e-75 286.2 172 82.6
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.7e-74 284.6 227 63.0
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 7.8e-72 275.8 202 65.8
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.9e-66 257.3 223 61.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 3.7e-66 256.9 262 50.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.5e-64 250.4 400 39.8
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.1e-62 245.4 277 50.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-59 235.3 284 51.1
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.3e-55 221.9 292 44.9
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-54 218.4 131 75.6
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-48 198.4 177 63.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.6e-45 188.3 128 71.9
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.2e-43 182.2 113 77.0
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 9.3e-41 172.6 272 41.2
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.6e-37 161.8 122 67.2
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.3e-34 152.1 210 47.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-31 142.1 105 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.6e-30 136.7 269 33.1
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.9e-27 125.9 95 71.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.1e-25 122.5 123 51.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.9e-25 121.7 268 34.0
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 9.3e-25 119.4 83 68.7
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.5e-22 111.3 104 52.9
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.8e-21 107.1 232 37.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 3.1e-20 104.4 88 58.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 4.9e-18 97.1 56 87.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 8.4e-18 96.3 71 64.8
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.5e-17 94.7 91 50.5
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 9.3e-17 92.8 57 86.0
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-16 92.4 71 62.0
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.5e-16 90.9 91 49.5
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.1e-15 87.0 55 76.4
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.0e-12 76.3 251 27.5
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 6.5e-10 70.1 59 57.6
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 5.5e-09 67.0 287 25.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.6e-08 65.5 109 34.9
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.1e-08 63.5 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.8e-07 62.0 36 83.3
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 3.3e-06 57.8 52 53.8


User provided reference genes

Program Settings