Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.8e-207 724.9 346 100.0
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 7.3e-195 683.7 346 93.1
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.2e-152 543.5 362 72.4
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.5e-149 531.9 355 69.9
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 6.7e-148 527.7 362 70.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.1e-147 526.9 359 69.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.8e-146 522.3 357 69.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.8e-146 522.3 364 67.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.4e-145 519.2 348 71.6
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.1e-142 510.4 362 69.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.4e-142 510.0 365 69.0
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.5e-142 509.2 362 69.3
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 5.5e-142 508.1 354 68.9
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 7.1e-142 507.7 368 67.9
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.3e-140 503.4 366 67.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.3e-140 503.4 362 66.0
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.3e-140 502.7 359 68.0
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 3.0e-140 502.3 355 68.5
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.7e-138 495.4 359 66.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.3e-137 491.5 357 67.8
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.9e-137 491.1 355 67.6
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.0e-136 489.6 356 66.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.6e-136 489.2 363 65.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.6e-136 489.2 366 65.0
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.5e-136 488.4 364 64.8
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.3e-135 486.9 357 66.4
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.2e-135 486.1 363 65.6
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.9e-135 485.7 365 64.1
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 2.9e-135 485.7 362 64.6
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.8e-135 485.3 360 65.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 3.8e-135 485.3 350 66.6
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 3.8e-135 485.3 367 65.1
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.8e-135 485.3 361 66.2
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 5.0e-135 485.0 358 62.8
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 8.5e-135 484.2 361 68.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-134 483.8 350 66.3
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.5e-134 482.6 360 65.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.2e-134 482.3 357 66.7
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.5e-134 481.5 358 64.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.2e-133 480.3 370 63.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.1e-133 479.6 360 65.0
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.1e-133 479.6 349 66.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 4.6e-133 478.4 356 64.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.8e-132 476.5 367 62.7
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.8e-132 476.5 355 64.8
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.9e-132 475.3 355 64.2
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.1e-131 473.8 354 63.6
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.9e-131 473.0 347 66.0
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.7e-130 469.9 354 62.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.4e-129 466.8 328 68.0
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.4e-129 466.1 377 61.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 3.4e-128 462.2 429 56.2
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.0e-127 460.7 340 66.2
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.2e-127 459.5 362 61.0
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.2e-126 455.7 405 57.0
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.6e-125 453.4 356 61.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.6e-125 452.2 353 61.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 6.1e-125 451.4 356 61.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 6.1e-125 451.4 360 63.3
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 7.9e-125 451.1 356 61.5
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.0e-124 450.7 350 60.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.0e-124 450.7 350 60.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.7e-124 448.0 357 61.6
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.1e-123 447.2 357 61.1
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.5e-123 446.8 355 61.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.0e-123 446.4 356 60.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.6e-123 446.0 355 63.7
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 3.3e-123 445.7 355 60.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 3.3e-123 445.7 352 62.2
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 4.4e-123 445.3 360 62.8
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.7e-122 443.4 356 60.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.7e-122 443.4 352 62.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.8e-122 442.6 357 60.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 4.8e-122 441.8 357 60.2
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 8.2e-122 441.0 351 61.5
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 8.2e-122 441.0 483 50.9
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.1e-121 440.7 357 60.2
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.1e-121 440.7 357 60.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.1e-121 440.7 359 61.3
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.8e-121 439.9 356 61.8
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.4e-121 439.5 357 60.8
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 4.5e-120 435.3 354 60.5
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 7.7e-120 434.5 355 58.3
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.0e-119 434.1 362 58.8
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.3e-119 433.7 357 61.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.7e-119 433.3 357 60.2
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.2e-118 429.1 425 52.0
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 3.6e-117 425.6 358 60.1
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.7e-117 425.2 358 60.1
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.2e-116 421.8 309 65.4
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 6.7e-116 421.4 324 65.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.8e-114 416.0 352 59.1
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.1e-113 414.1 355 60.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 4.1e-113 412.1 402 53.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.2e-111 406.4 345 60.0
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 5.2e-108 395.2 284 65.1
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.2e-107 394.0 254 72.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 5.7e-107 391.7 341 55.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.4e-105 386.3 356 54.8
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 3.8e-103 379.0 341 56.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.2e-101 374.0 356 52.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 6.1e-101 371.7 351 55.3
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.8e-100 370.2 386 49.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.7e-98 362.5 352 55.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.5e-94 349.7 319 56.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.9e-92 341.3 245 66.1
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.4e-89 334.0 300 58.0
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.2e-88 330.9 423 43.7
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.1e-85 320.1 199 75.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.5e-83 313.9 280 56.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 8.3e-82 308.1 176 77.3
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.3e-78 295.8 154 85.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.8e-77 293.1 375 41.9
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 3.6e-77 292.7 400 40.2
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 6.8e-76 288.5 354 43.5
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.2e-74 283.5 358 45.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.4e-73 280.0 221 62.9
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.7e-64 250.0 134 84.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.5e-62 244.2 126 84.9
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 8.1e-53 211.8 265 43.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 8.1e-53 211.8 265 43.4
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.6e-48 197.6 160 63.1
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.5e-40 169.9 126 57.1
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.3e-39 167.9 203 44.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.3e-39 167.2 203 44.8
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 9.0e-36 155.2 83 81.9
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.2e-33 146.4 211 42.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 5.6e-30 136.0 77 81.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 5.8e-27 125.9 120 53.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.0e-23 113.6 130 51.5
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 8.2e-21 105.5 220 33.6
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.4e-20 104.8 123 50.4
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.1e-12 77.0 98 44.9


User provided reference genes

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