Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.1e-160 567.8 304 100.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.1e-153 545.8 304 96.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 4.2e-138 495.0 304 85.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.9e-137 490.7 304 85.9
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.9e-137 490.7 304 85.9
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.0e-135 486.1 304 84.5
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.6e-135 485.7 304 85.5
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.3e-135 485.3 308 84.1
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.7e-134 483.0 304 84.5
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 2.2e-134 482.6 304 83.6
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.8e-134 482.3 304 85.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.4e-133 479.2 306 84.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.1e-133 478.8 304 81.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.1e-133 478.4 308 84.4
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.1e-133 478.4 314 80.6
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 5.3e-133 478.0 306 84.0
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 7.0e-133 477.6 306 82.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 9.1e-133 477.2 304 83.6
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.2e-132 476.9 304 84.2
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.5e-132 476.5 306 84.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.5e-132 476.5 306 84.0
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 7.7e-132 474.2 308 81.2
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 7.7e-132 474.2 304 81.6
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.3e-131 473.4 304 81.6
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.9e-131 472.2 306 83.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.9e-131 472.2 306 81.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 5.0e-131 471.5 310 80.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.5e-131 471.1 304 83.9
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 6.5e-131 471.1 304 83.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 8.5e-131 470.7 308 84.4
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.5e-130 469.9 306 82.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 3.2e-130 468.8 302 81.1
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.2e-130 468.8 306 83.7
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 5.5e-130 468.0 304 82.9
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.2e-129 466.8 307 81.4
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.2e-129 466.8 302 81.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.2e-129 466.8 304 80.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 80.1
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 6.1e-129 464.5 307 78.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 80.6
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 302 81.8
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 304 81.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.1e-127 460.3 306 81.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.5e-127 459.9 306 79.1
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.0e-127 459.5 302 78.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 3.3e-127 458.8 304 80.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 7.4e-127 457.6 307 78.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 3.7e-126 455.3 305 80.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.1e-125 453.8 306 79.1
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.4e-125 453.4 306 81.4
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.8e-125 453.0 305 80.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.8e-125 453.0 302 76.2
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.4e-125 452.6 304 77.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.4e-125 452.6 304 76.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.1e-125 452.2 306 78.8
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 4.1e-125 451.8 306 78.1
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 5.3e-125 451.4 302 77.2
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 7.0e-125 451.1 304 77.0
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 80.4
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 78.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 78.6
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.6e-124 449.9 306 80.1
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-124 448.7 304 78.9
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.5e-124 448.4 308 76.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 4.5e-124 448.4 306 80.1
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 4.5e-124 448.4 306 80.1
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 4.5e-124 448.4 306 80.1
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 4.5e-124 448.4 305 79.3
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 5.9e-124 448.0 304 78.6
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 5.9e-124 448.0 304 79.3
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.9e-124 448.0 307 80.1
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 79.9
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.7e-123 446.4 308 79.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.2e-123 446.0 304 76.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 79.9
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 78.9
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 8.5e-123 444.1 302 78.5
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 8.5e-123 444.1 304 79.6
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 8.5e-123 444.1 304 76.0
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.1e-122 443.7 302 79.5
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 79.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 4.2e-122 441.8 304 79.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 5.5e-122 441.4 304 78.9
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 78.9
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 78.9
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 78.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 78.3
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.6e-121 439.9 307 78.8
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 77.7
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 78.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.6e-121 438.7 306 74.8
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 6.1e-121 438.0 305 77.7
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.1e-121 438.0 305 77.7
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.0e-121 437.6 303 77.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 78.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 287 79.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 5.2e-120 434.9 310 76.1
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.8e-120 434.5 305 77.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 2.6e-119 432.6 304 75.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.8e-118 429.1 298 75.5
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.1e-117 425.6 306 72.9
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 5.3e-117 424.9 304 74.7
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.2e-116 423.7 306 77.1
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.7e-116 421.0 282 81.9
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.9e-115 419.1 301 74.8
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.8e-115 418.7 306 76.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 6.5e-115 417.9 306 71.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.2e-114 415.2 304 74.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 9.1e-109 397.5 307 73.9
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 3.5e-108 395.6 312 70.8
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 7.7e-108 394.4 304 68.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-106 389.4 314 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 6.1e-105 384.8 301 69.1
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 8.9e-104 380.9 304 64.8
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.5e-98 362.8 295 70.8
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.7e-94 350.1 319 59.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-89 334.0 195 82.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.3e-88 329.7 305 59.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.5e-84 315.8 254 69.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.6e-82 308.5 304 59.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.5e-82 307.8 254 65.7
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 9.5e-82 307.8 300 56.0
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.4e-79 299.3 305 55.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 6.0e-76 288.5 304 56.9
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.3e-67 260.8 134 94.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.0e-67 259.6 303 49.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.1e-64 249.6 200 71.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.5e-55 219.2 276 52.5
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.5e-55 219.2 195 66.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.4e-53 212.2 195 62.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 7.1e-53 211.8 204 61.8
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 6.7e-51 205.3 309 45.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-48 198.0 295 44.7
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.9e-46 189.1 195 56.9
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-42 177.6 169 65.7
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 6.2e-41 172.2 199 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.1e-40 169.9 111 78.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.0e-38 164.9 232 44.8
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.9e-37 160.6 270 48.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.9e-37 160.6 104 74.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 6.9e-32 142.1 177 47.5
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.9e-30 136.7 102 65.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 6.3e-25 119.0 149 54.4
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 5.9e-23 112.5 304 34.2
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.3e-22 111.3 304 33.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 6.5e-22 109.0 77 68.8
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 77 66.2
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.5e-21 105.9 61 80.3
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 6.7e-19 99.0 68 70.6
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.2e-15 88.2 149 45.0
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-14 84.0 119 51.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 8.5e-14 82.0 119 53.8
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 5.2e-11 72.8 101 52.5
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.5e-10 71.2 52 75.0
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-10 71.2 97 53.6
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 2.9e-06 57.0 78 44.9


User provided reference genes

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