Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G117700 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.8e-48 195.7 105 100.0
Sabra16G0113800 Salix brachista HOM05D001594 ORTHO05D002862 1.8e-35 152.5 105 79.0
Potri.006G101600 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.7e-33 146.0 106 80.2
Potri.016G117800 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.7e-22 109.4 104 57.7
Thecc.05G014100 Theobroma cacao HOM05D001594 ORTHO05D002862 1.7e-22 109.4 105 58.1
Atru.chr8.2259 Acer truncatum HOM05D001594 ORTHO05D002862 2.2e-22 109.0 105 59.0
COL.COLO4_14516 Corchorus olitorius HOM05D001594 ORTHO05D002862 2.9e-22 108.6 105 57.1
Manes.08G093100 Manihot esculenta HOM05D001594 ORTHO05D002862 3.8e-22 108.2 101 58.4
Ciclev10010948m.g Citrus clementina HOM05D001594 ORTHO05D002862 5.0e-22 107.8 105 55.2
Dinv05667 Davidia involucrata HOM05D001594 ORTHO05D002862 4.2e-21 104.8 106 57.5
Duzib106G0141 Durio zibethinus HOM05D001594 ORTHO05D002862 7.2e-21 104.0 105 55.2
Gorai.012G115100 Gossypium raimondii HOM05D001594 ORTHO05D002862 9.4e-21 103.6 105 54.3
Gohir.A04G092000 Gossypium hirsutum HOM05D001594 ORTHO05D002862 1.2e-20 103.2 105 54.3
Haze_21018 Corylus avellana HOM05D001594 ORTHO05D002862 2.7e-20 102.1 106 55.7
Gohir.D04G131200 Gossypium hirsutum HOM05D001594 ORTHO05D002862 2.7e-20 102.1 100 56.0
MD12G1168800 Malus domestica HOM05D001594 ORTHO05D002862 4.7e-20 101.3 105 55.2
TAR623G1719 Trochodendron aralioides HOM05D001594 ORTHO05D002862 6.1e-20 100.9 106 54.7
Cc06_g01220 Coffea canephora HOM05D001594 ORTHO05D002862 8.0e-20 100.5 106 56.6
Sabra16G0114000 Salix brachista HOM05D001594 ORTHO05D002862 1.0e-19 100.1 120 50.0
GSVIVG01011173001 Vitis vinifera HOM05D001594 ORTHO05D002862 1.0e-19 100.1 106 54.7
Duzib093G0392 Durio zibethinus HOM05D001594 ORTHO05D002862 6.8e-19 97.4 112 51.8
Migut.J00151 Erythranthe guttata HOM05D001594 ORTHO05D002862 6.8e-19 97.4 104 53.8
TWI74G0921 Tripterygium wilfordii HOM05D001594 ORTHO05D002862 8.8e-19 97.1 96 56.2
Lalb_Chr03g0043221 Lupinus albus HOM05D001594 ORTHO05D002862 1.2e-18 96.7 107 50.5
MD04G1155600 Malus domestica HOM05D001594 ORTHO05D002862 1.5e-18 96.3 105 51.4
FAN02G3794 Fragaria x ananassa HOM05D001594 ORTHO05D002862 2.0e-18 95.9 105 50.5
FAN05G3721 Fragaria x ananassa HOM05D001594 ORTHO05D002862 2.6e-18 95.5 105 49.5
Lj1g0012009 Lotus japonicus HOM05D001594 ORTHO05D002862 2.6e-18 95.5 105 52.4
QL07p035246 Quercus lobata HOM05D001594 ORTHO05D002862 2.6e-18 95.5 105 54.3
Glyma.07G151400 Glycine max HOM05D001594 ORTHO05D002862 3.4e-18 95.1 107 50.5
FAN09G2159 Fragaria x ananassa HOM05D001594 ORTHO05D002862 5.7e-18 94.4 105 49.5
Lsat_1_v5_gn_9_35340 Lactuca sativa HOM05D001594 ORTHO05D002862 5.7e-18 94.4 106 50.0
Rhsim05G0216900 Rhododendron simsii HOM05D001594 ORTHO05D002862 5.7e-18 94.4 106 52.8
Hma1.2p1_0479F.1_g161395 Hydrangea macrophylla HOM05D001594 ORTHO05D002862 7.5e-18 94.0 95 51.6
Oeu038766.1 Olea europaea HOM05D001594 ORTHO05D002862 7.5e-18 94.0 104 51.9
Cfa017193 Carpinus fangiana HOM05D001594 ORTHO05D002862 9.8e-18 93.6 107 53.3
Phvul.008G098000 Phaseolus vulgaris HOM05D001594 ORTHO05D002862 9.8e-18 93.6 104 51.9
Psat3g127240 Pisum sativum HOM05D001594 ORTHO05D002862 9.8e-18 93.6 108 50.0
Aqoxy2G00867 Aquilegia oxysepala HOM05D001594 ORTHO05D002862 1.3e-17 93.2 106 47.2
arahy.Tifrunner.gnm1.ann1.XZA3Z3 Arachis hypogaea HOM05D001594 ORTHO05D002862 1.3e-17 93.2 102 52.9
Eucgr.J00199 Eucalyptus grandis HOM05D001594 ORTHO05D002862 1.3e-17 93.2 105 51.4
RcHm_v2.0_Chr3g0462831 Rosa chinensis HOM05D001594 ORTHO05D002862 1.3e-17 93.2 105 47.6
Actinidia11574 Actinidia chinensis HOM05D001594 ORTHO05D002862 1.7e-17 92.8 106 52.8
FvH4_6g11290 Fragaria vesca HOM05D001594 ORTHO05D002862 1.7e-17 92.8 105 48.6
FAN14G0933 Fragaria x ananassa HOM05D001594 ORTHO05D002862 1.7e-17 92.8 105 48.6
FAN14G4686 Fragaria x ananassa HOM05D001594 ORTHO05D002862 1.7e-17 92.8 105 48.6
HanXRQChr10g0294031 Helianthus annuus HOM05D001594 ORTHO05D002862 1.7e-17 92.8 102 53.9
VMungo1383G3732 Vigna mungo HOM05D001594 ORTHO05D002862 1.7e-17 92.8 107 50.5
Glyma.18G202700 Glycine max HOM05D001594 ORTHO05D002862 2.8e-17 92.0 107 49.5
Prupe.6G279100 Prunus persica HOM05D001594 ORTHO05D002862 2.8e-17 92.0 105 52.4
Sed0001337 Sechium edule HOM05D001594 ORTHO05D002862 2.8e-17 92.0 105 53.3
vmacro06960 Vaccinium macrocarpon HOM05D001594 ORTHO05D002862 3.7e-17 91.7 106 51.9
Dinv21741 Davidia involucrata HOM05D001594 ORTHO05D002862 4.8e-17 91.3 104 49.0
Medtr7g068810 Medicago truncatula HOM05D001594 ORTHO05D002862 4.8e-17 91.3 107 48.6
CsaV3_3G033670 Cucumis sativus L. HOM05D001594 ORTHO05D002862 6.3e-17 90.9 92 55.4
Hma1.2p1_0523F.1_g172240 Hydrangea macrophylla HOM05D001594 ORTHO05D002862 6.3e-17 90.9 104 51.0
Peaxi162Scf00170g00123 Petunia axillaris HOM05D001594 ORTHO05D002862 6.3e-17 90.9 107 54.2
Medtr5g082840 Medicago truncatula HOM05D001594 ORTHO05D002862 8.3e-17 90.5 108 50.0
TPR.G20368 Trifolium pratense HOM05D001594 ORTHO05D002862 8.3e-17 90.5 107 48.6
CANSAT35G1569 Cannabis sativa HOM05D001594 ORTHO05D002862 1.1e-16 90.1 106 48.1
ECA247G0278 Erigeron canadensis HOM05D001594 ORTHO05D002862 1.1e-16 90.1 107 52.3
Lalb_Chr04g0250541 Lupinus albus HOM05D001594 ORTHO05D002862 1.1e-16 90.1 100 50.0
Psat2g031840 Pisum sativum HOM05D001594 ORTHO05D002862 1.1e-16 90.1 98 51.0
PGR031G3904 Punica granatum HOM05D001594 ORTHO05D002862 1.1e-16 90.1 102 52.0
THA.LOC104823185 Tarenaya hassleriana HOM05D001594 ORTHO05D002862 1.1e-16 90.1 102 48.0
Nitab4.5_0012190g0010 Nicotiana tabacum HOM05D001594 ORTHO05D002862 1.4e-16 89.7 104 49.0
Solyc09g005600.3 Solanum lycopersicum HOM05D001594 ORTHO05D002862 1.4e-16 89.7 110 53.6
THA.LOC104826848 Tarenaya hassleriana HOM05D001594 ORTHO05D002862 1.4e-16 89.7 102 47.1
Ca_05970_v3 Cicer arietinum L. HOM05D001594 ORTHO05D002862 1.8e-16 89.4 98 49.0
Ca_26556_v3 Cicer arietinum L. HOM05D001594 ORTHO05D002862 1.8e-16 89.4 109 47.7
Sopen09g001500 Solanum pennellii HOM05D001594 ORTHO05D002862 1.8e-16 89.4 110 53.6
vmacro20290 Vaccinium macrocarpon HOM05D001594 ORTHO05D002862 1.8e-16 89.4 94 57.4
SGA_v2.0_scaffold76G25115 Striga asiatica HOM05D001594 ORTHO05D002862 2.4e-16 89.0 105 49.5
AUR62012263 Chenopodium quinoa HOM05D001594 ORTHO05D002862 3.1e-16 88.6 105 48.6
COL.COLO4_25745 Corchorus olitorius HOM05D001594 ORTHO05D002862 3.1e-16 88.6 104 48.1
PGSC0003DMG402008471 Solanum tuberosum HOM05D001594 ORTHO05D002862 3.1e-16 88.6 102 51.0
AL6G15460 Arabidopsis lyrata HOM05D001594 ORTHO05D002862 4.1e-16 88.2 97 47.4
BraA10t45114Z Brassica rapa HOM05D001594 ORTHO05D002862 4.1e-16 88.2 102 46.1
Eucgr.A00527 Eucalyptus grandis HOM05D001594 ORTHO05D002862 4.1e-16 88.2 104 49.0
Nitab4.5_0000261g0050 Nicotiana tabacum HOM05D001594 ORTHO05D002862 4.1e-16 88.2 107 51.4
Nitab4.5_0002020g0060 Nicotiana tabacum HOM05D001594 ORTHO05D002862 4.1e-16 88.2 107 51.4
Nitab4.5_0005018g0040 Nicotiana tabacum HOM05D001594 ORTHO05D002862 4.1e-16 88.2 104 49.0
BcaC06g32266 Brassica carinata HOM05D001594 ORTHO05D002862 5.4e-16 87.8 102 46.1
A10p30730 Brassica napus HOM05D001594 ORTHO05D002862 5.4e-16 87.8 102 46.1
C09p71220 Brassica napus HOM05D001594 ORTHO05D002862 5.4e-16 87.8 102 46.1
Migut.F01397 Erythranthe guttata HOM05D001594 ORTHO05D002862 5.4e-16 87.8 102 51.0
Aqoxy4G02529 Aquilegia oxysepala HOM05D001594 ORTHO05D002862 7.0e-16 87.4 90 53.3
Thhalv10012508m.g Eutrema salsugineum HOM05D001594 ORTHO05D002862 7.0e-16 87.4 101 45.5
Lj3C951G4 Lonicera japonica HOM05D001594 ORTHO05D002862 7.0e-16 87.4 126 44.4
Solyc06g051380.3 Solanum lycopersicum HOM05D001594 ORTHO05D002862 7.0e-16 87.4 102 51.0
BcaB05g21696 Brassica carinata HOM05D001594 ORTHO05D002862 9.1e-16 87.0 97 47.4
BolC2t06205H Brassica oleracea HOM05D001594 ORTHO05D002862 9.1e-16 87.0 97 47.4
BraA02t04854Z Brassica rapa HOM05D001594 ORTHO05D002862 9.1e-16 87.0 97 47.4
AT5G05570 Arabidopsis thaliana HOM05D001594 ORTHO05D002862 1.2e-15 86.7 97 47.4
C02p02420 Brassica napus HOM05D001594 ORTHO05D002862 1.2e-15 86.7 95 48.4
CSS0047942 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D002862 1.2e-15 86.7 81 58.0
AUR62022896 Chenopodium quinoa HOM05D001594 ORTHO05D002862 1.2e-15 86.7 109 50.5
GSVIVG01032802001 Vitis vinifera HOM05D001594 ORTHO05D002862 1.2e-15 86.7 99 48.5
CSS0007956 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D002862 1.6e-15 86.3 81 58.0
CANSAT56G2210 Cannabis sativa HOM05D001594 ORTHO05D002862 1.6e-15 86.3 89 53.9
CARHR207690 Cardamine hirsuta HOM05D001594 ORTHO05D002862 1.6e-15 86.3 102 45.1
CiPaw.02G193300 Carya illinoinensis HOM05D001594 ORTHO05D002862 1.6e-15 86.3 107 51.4
Sp6g37290 Schrenkiella parvula HOM05D001594 ORTHO05D002862 1.6e-15 86.3 102 46.1
Carub.0006s0447 Capsella rubella HOM05D001594 ORTHO05D002862 2.0e-15 85.9 97 46.4
DCAR_010464 Daucus carota HOM05D001594 ORTHO05D002862 2.7e-15 85.5 92 48.9
Sopen06g017360 Solanum pennellii HOM05D001594 ORTHO05D002862 2.7e-15 85.5 102 50.0
Ciclev10030572m.g Citrus clementina HOM05D001594 ORTHO05D002862 3.5e-15 85.1 106 44.3
Duzib128G1282 Durio zibethinus HOM05D001594 ORTHO05D002862 3.5e-15 85.1 106 46.2
Potri.008G069700 Populus trichocarpa HOM05D001594 ORTHO05D002862 3.5e-15 85.1 102 50.0
Hund10997 Selenicereus undatus HOM05D001594 ORTHO05D002862 3.5e-15 85.1 106 48.1
TWI09G1043 Tripterygium wilfordii HOM05D001594 ORTHO05D002862 4.5e-15 84.7 104 48.1
MSTRG.8337 Avicennia marina HOM05D001594 ORTHO05D002862 7.7e-15 84.0 104 51.0
EL10Ac2g04845 Beta vulgaris HOM05D001594 ORTHO05D002862 1.0e-14 83.6 100 48.0
Lj8C66G2 Lonicera japonica HOM05D001594 ORTHO05D002862 1.0e-14 83.6 102 47.1
LjContig00357g0010800 Lotus japonicus HOM05D001594 ORTHO05D002862 1.0e-14 83.6 106 43.4
Sabra08G0051300 Salix brachista HOM05D001594 ORTHO05D002862 1.0e-14 83.6 92 52.2
Potri.010G187700 Populus trichocarpa HOM05D001594 ORTHO05D002862 1.3e-14 83.2 104 48.1
Phvul.008G223200 Phaseolus vulgaris HOM05D001594 ORTHO05D002862 1.7e-14 82.8 81 55.6
SalBow5G4926 Salvia bowleyana HOM05D001594 ORTHO05D002862 1.7e-14 82.8 102 46.1
MELO3C026791.2 Cucumis melo HOM05D001594 ORTHO05D002862 2.2e-14 82.4 102 44.1
Rhsim03G0144700 Rhododendron simsii HOM05D001594 ORTHO05D002862 2.2e-14 82.4 107 50.5
arahy.Tifrunner.gnm1.ann1.0534HL Arachis hypogaea HOM05D001594 ORTHO05D002862 2.9e-14 82.0 79 53.2
arahy.Tifrunner.gnm1.ann1.KP3J42 Arachis hypogaea HOM05D001594 ORTHO05D002862 2.9e-14 82.0 79 53.2
unitig_0.g243 Utricularia gibba HOM05D001594 ORTHO05D002862 2.9e-14 82.0 105 44.8
Ah.12g058730 Amaranthus hybridus HOM05D001594 ORTHO05D002862 3.8e-14 81.6 103 48.5
Manes.10G011200 Manihot esculenta HOM05D001594 ORTHO05D002862 3.8e-14 81.6 102 49.0
Glyma.02G257800 Glycine max HOM05D001594 ORTHO05D002862 5.0e-14 81.3 101 47.5
CsaV3_5G010240 Cucumis sativus L. HOM05D001594 ORTHO05D002862 6.5e-14 80.9 101 46.5
VMungo0647G1485 Vigna mungo HOM05D001594 ORTHO05D002862 6.5e-14 80.9 81 53.1
TPR.G38423 Trifolium pratense HOM05D001594 ORTHO05D002862 8.5e-14 80.5 100 50.0
ClCG07G004300 Citrullus lanatus HOM05D001594 ORTHO05D002862 1.1e-13 80.1 101 46.5
Gohir.A05G329933 Gossypium hirsutum HOM05D001594 ORTHO05D002862 1.1e-13 80.1 87 48.3
Gohir.D04G068000 Gossypium hirsutum HOM05D001594 ORTHO05D002862 1.1e-13 80.1 92 45.7
Gorai.012G077100 Gossypium raimondii HOM05D001594 ORTHO05D002862 1.1e-13 80.1 92 45.7
Nn2g10868 Nelumbo nucifera HOM05D001594 ORTHO05D002862 1.1e-13 80.1 106 45.3
Sed0018377 Sechium edule HOM05D001594 ORTHO05D002862 1.1e-13 80.1 102 46.1
Cc02_g06390 Coffea canephora HOM05D001594 ORTHO05D002862 1.5e-13 79.7 102 46.1
Ah.16g103590 Amaranthus hybridus HOM05D001594 ORTHO05D002862 1.9e-13 79.3 102 46.1
Aa31LG11G6630 Aethionema arabicum HOM05D001594 ORTHO05D002862 3.2e-13 78.6 81 49.4
BolC9t59883H Brassica oleracea HOM05D001594 ORTHO05D002862 7.2e-13 77.4 97 44.3
PSO339G3156 Papaver somniferum HOM05D001594 ORTHO05D002862 7.2e-13 77.4 106 45.3
RcHm_v2.0_Chr1g0370431 Rosa chinensis HOM05D001594 ORTHO05D002862 1.6e-12 76.3 102 42.2
ECA233G4237 Erigeron canadensis HOM05D001594 ORTHO05D002862 2.1e-12 75.9 103 46.6
TAR369G0238 Trochodendron aralioides HOM05D001594 ORTHO05D002862 4.7e-12 74.7 94 47.9
PSO801G0181 Papaver somniferum HOM05D001594 ORTHO05D002862 6.1e-12 74.3 103 45.6
EL10Ac5g12548 Beta vulgaris HOM05D001594 ORTHO05D002862 8.0e-12 73.9 98 46.9
CAN.G740.5 Capsicum annuum HOM05D001594 ORTHO05D000105 8.0e-12 73.9 95 49.5
AUR62030493 Chenopodium quinoa HOM05D001594 ORTHO05D002862 8.0e-12 73.9 104 43.3
HanXRQChr08g0221751 Helianthus annuus HOM05D001594 ORTHO05D002862 8.0e-12 73.9 78 51.3
Os07g0693700 Oryza sativa ssp. japonica HOM05D001594 ORTHO05D002862 1.8e-11 72.8 101 43.6
Cpa.g.sc11.112 Carica papaya HOM05D001594 ORTHO05D002862 2.3e-11 72.4 105 43.8
Lsat_1_v5_gn_8_11660 Lactuca sativa HOM05D001594 ORTHO05D002862 3.0e-11 72.0 95 46.3
Os03g0290400 Oryza sativa ssp. japonica HOM05D001594 ORTHO05D002862 4.0e-11 71.6 87 44.8
SMO115G0087 Selaginella moellendorffii HOM05D001594 ORTHO05D002862 4.0e-11 71.6 91 47.3
Sc14g0005470 Simmondsia chinensis HOM05D001594 ORTHO05D002862 8.8e-11 70.5 97 46.4
Pp3c1_26350 Physcomitrium patens HOM05D001594 ORTHO05D002862 2.6e-10 68.9 93 45.2
unitig_26.g9086 Utricularia gibba HOM05D001594 ORTHO05D002862 2.6e-10 68.9 103 37.9
Atru.chr12.49 Acer truncatum HOM05D001594 ORTHO05D002862 3.4e-10 68.6 105 41.0
Thecc.10G015000 Theobroma cacao HOM05D001594 ORTHO05D002862 3.4e-10 68.6 104 39.4
Hund13872 Selenicereus undatus HOM05D001594 ORTHO05D002862 4.4e-10 68.2 139 36.0
PGR044G1719 Punica granatum HOM05D001594 ORTHO05D002862 7.5e-10 67.4 95 44.2
DCAR_015401 Daucus carota HOM05D001594 ORTHO05D002862 1.7e-09 66.2 134 38.8
MD01G1154200 Malus domestica HOM05D001594 ORTHO05D002862 2.8e-09 65.5 99 43.4
Actinidia29705 Actinidia chinensis HOM05D001594 ORTHO05D002862 3.7e-09 65.1 93 43.0
Mapoly0063s0003 Marchantia polymorpha HOM05D001594 ORTHO05D002862 6.3e-09 64.3 99 39.4
AUR62030802 Chenopodium quinoa HOM05D001594 ORTHO05D002862 1.1e-08 63.5 94 41.5
Prupe.2G251300 Prunus persica HOM05D001594 ORTHO05D002862 1.8e-08 62.8 105 37.1
FAN06G3364 Fragaria x ananassa HOM05D001594 ORTHO05D002862 2.4e-08 62.4 102 39.2
Gohir.D04G063466 Gossypium hirsutum HOM05D001594 ORTHO05D002862 4.1e-08 61.6 92 41.3
Mapoly0207s0009 Marchantia polymorpha HOM05D001594 ORTHO05D002862 5.4e-08 61.2 95 43.2
Peaxi162Scf00284g01036 Petunia axillaris HOM05D001594 ORTHO05D002862 1.2e-07 60.1 49 55.1
FvH4_7g24600 Fragaria vesca HOM05D001594 ORTHO05D002862 2.7e-07 58.9 102 37.3
FAN03G3481 Fragaria x ananassa HOM05D001594 ORTHO05D002862 7.7e-07 57.4 102 37.3
Zm00001eb397030 Zea mays HOM05D001594 ORTHO05D002862 1.3e-06 56.6 105 38.1
FAN01G1400 Fragaria x ananassa HOM05D001594 ORTHO05D002862 8.6e-06 53.9 102 35.3


User provided reference genes

Program Settings