Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.9e-163 579.3 335 100.0
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.3e-140 503.4 335 88.4
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.8e-134 483.0 414 73.4
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.0e-132 477.2 353 81.0
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 5.0e-132 474.9 353 80.7
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.4e-126 456.1 349 76.2
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.2e-125 453.8 340 79.1
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 7.7e-125 451.1 350 78.6
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 1.3e-124 450.3 350 79.1
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.4e-123 446.8 362 79.0
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 3.2e-123 445.7 341 77.1
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 2.7e-122 442.6 381 64.3
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 3.6e-122 442.2 348 74.1
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 6.1e-122 441.4 350 79.1
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 6.1e-122 441.4 339 78.2
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.0e-121 440.7 345 76.8
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.4e-121 440.3 348 77.3
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.3e-121 439.5 337 77.2
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 5.2e-121 438.3 245 90.2
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 8.8e-121 437.6 345 75.4
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 8.8e-121 437.6 332 77.7
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.5e-120 436.8 334 77.5
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.5e-120 436.8 340 80.9
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.6e-120 436.0 349 74.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.7e-120 434.9 365 77.8
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 7.4e-120 434.5 239 91.2
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 9.7e-120 434.1 260 85.0
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 9.7e-120 434.1 260 85.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 2.2e-119 433.0 347 73.8
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 3.7e-119 432.2 245 88.2
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 3.7e-119 432.2 261 84.3
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 4.8e-119 431.8 240 89.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 4.8e-119 431.8 240 89.2
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 4.8e-119 431.8 260 85.4
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.3e-119 431.4 239 90.0
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 6.3e-119 431.4 328 78.0
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 1.1e-118 430.6 348 74.1
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 4.1e-118 428.7 318 79.9
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 5.3e-118 428.3 347 78.7
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 5.3e-118 428.3 347 77.5
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.0e-118 427.9 344 73.3
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 7.0e-118 427.9 332 75.3
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-117 426.8 362 72.4
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.6e-117 426.8 238 89.9
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.6e-117 426.8 235 89.4
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.6e-117 426.0 346 76.0
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.5e-117 425.6 240 88.3
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.5e-117 425.6 262 82.4
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.5e-117 425.2 362 71.8
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 7.7e-117 424.5 241 87.6
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 7.7e-117 424.5 353 70.3
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.0e-116 424.1 329 79.9
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.3e-116 423.7 352 74.7
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.7e-116 423.3 229 90.4
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.7e-116 423.3 258 83.3
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.8e-116 422.2 349 74.8
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.8e-116 422.2 349 74.8
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 3.8e-116 422.2 262 82.1
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 5.0e-116 421.8 260 83.1
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.1e-115 420.6 356 76.7
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.1e-115 420.6 334 76.3
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.9e-115 419.9 227 90.7
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 3.2e-115 419.1 220 92.3
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.2e-115 419.1 349 74.5
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 4.2e-115 418.7 235 88.9
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 4.2e-115 418.7 240 85.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.2e-115 418.7 348 75.6
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 4.2e-115 418.7 348 73.0
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 4.2e-115 418.7 264 80.7
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 4.2e-115 418.7 237 88.2
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 9.4e-115 417.5 345 75.1
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 2.1e-114 416.4 241 87.6
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 3.6e-114 415.6 348 73.0
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.0e-113 414.1 227 88.1
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.4e-113 413.7 243 86.4
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.3e-113 412.9 247 85.4
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 4.0e-113 412.1 225 89.3
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.2e-112 410.6 222 90.1
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.5e-112 410.2 227 87.7
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 2.6e-112 409.5 413 62.7
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.7e-112 408.3 353 72.2
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.7e-112 408.3 353 72.2
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 7.5e-112 407.9 227 87.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.3e-111 407.1 237 84.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.2e-111 406.4 347 74.6
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 2.8e-111 406.0 346 75.4
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 3.7e-111 405.6 367 73.0
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 1.8e-110 403.3 231 85.7
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 7.0e-110 401.4 233 84.5
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 9.1e-110 401.0 317 77.9
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.0e-108 397.5 231 82.7
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.0e-108 397.5 231 82.7
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.3e-108 397.1 231 82.7
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.3e-108 397.1 231 82.7
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.2e-108 396.4 244 83.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.1e-107 394.0 234 85.0
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 7.2e-107 391.3 253 79.8
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.6e-106 390.2 247 79.4
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.8e-105 386.7 253 79.8
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 4.0e-105 385.6 245 80.4
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 3.4e-104 382.5 232 80.6
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 4.8e-103 378.6 208 90.9
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.3e-100 370.5 240 78.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 6.5e-100 368.2 244 77.5
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 3.5e-93 345.9 237 74.7
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 7.3e-91 338.2 302 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.2e-90 337.4 181 91.7
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 7.5e-88 328.2 208 76.9
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 4.1e-86 322.4 244 70.1
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 5.4e-86 322.0 342 53.8
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.2e-85 320.9 254 67.3
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 5.6e-83 312.0 176 89.2
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 7.5e-80 301.6 351 63.0
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.0e-77 293.5 670 39.4
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.0e-76 291.2 341 55.7
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.1e-75 287.7 218 65.1
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 4.7e-74 282.3 281 65.8
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.8e-73 280.4 189 74.1
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.1e-70 269.2 207 69.1
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 2.1e-66 256.9 148 83.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 2.4e-62 243.4 132 90.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 5.4e-62 242.3 243 72.0
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.9e-60 236.1 221 58.8
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 4.2e-54 216.1 198 59.6
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.9e-52 209.5 108 92.6
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.1e-52 209.1 108 94.4
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 5.1e-52 209.1 107 95.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.9e-51 207.2 107 95.3
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.8e-49 200.7 241 57.3
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.3e-49 199.1 218 67.9
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 9.9e-48 194.9 106 86.8
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.2e-47 193.7 107 87.9
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.4e-46 189.1 106 88.7
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 6.0e-45 185.7 242 57.4
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.8e-44 184.1 92 95.7
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 2.1e-42 177.2 224 64.7
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.4e-41 174.5 95 90.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.2e-40 171.4 95 89.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 7.6e-40 168.7 90 87.8
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.6e-37 161.0 135 65.2
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 2.7e-37 160.2 201 61.7
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 4.9e-31 139.4 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 4.9e-31 139.4 71 91.5
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 8.4e-31 138.7 83 79.5
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.2e-21 108.2 90 63.3
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 2.1e-21 107.5 58 87.9
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 2.3e-20 104.0 172 58.1
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.1e-20 102.8 119 57.1
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 4.4e-11 73.2 144 50.7
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 9.7e-11 72.0 170 54.7
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 2.8e-10 70.5 148 58.1
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 3.7e-10 70.1 103 46.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 4.8e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.2e-10 68.9 38 86.8
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.0e-07 59.7 45 64.4


User provided reference genes

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