Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 3.3e-234 814.7 422 100.0
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.8e-227 792.3 422 96.9
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 6.5e-222 773.9 422 95.0
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 8.8e-219 763.5 422 92.9
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 8.2e-217 756.9 453 88.1
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.0e-215 752.3 422 91.2
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.7e-215 751.9 422 91.5
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.5e-213 746.1 422 89.1
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 4.2e-213 744.6 422 89.8
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 4.2e-213 744.6 422 89.8
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 5.5e-213 744.2 418 90.2
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 7.2e-213 743.8 422 89.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.6e-212 742.7 419 89.5
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.6e-212 742.7 421 90.3
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 4.7e-212 741.1 422 89.3
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.7e-212 741.1 422 89.1
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 6.1e-212 740.7 422 89.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 8.0e-212 740.3 422 89.8
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 8.0e-212 740.3 421 88.8
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.8e-211 739.2 422 88.6
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.0e-211 738.0 419 89.3
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 4.0e-211 738.0 422 89.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.2e-211 737.6 422 88.9
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 8.8e-211 736.9 421 89.8
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.2e-210 736.5 418 88.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 88.9
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 89.8
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.4e-210 734.9 422 88.2
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.4e-210 734.6 431 87.5
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 5.7e-210 734.2 419 88.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 7.5e-210 733.8 420 88.3
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 9.8e-210 733.4 419 89.3
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 9.8e-210 733.4 419 88.5
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 9.8e-210 733.4 420 89.3
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.3e-209 733.0 419 88.8
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.7e-209 732.6 418 89.7
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.8e-209 731.9 422 88.4
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 3.7e-209 731.5 419 88.8
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.7e-209 731.5 422 87.4
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.7e-209 731.5 419 88.3
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.8e-209 731.1 418 89.7
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.8e-209 731.1 420 88.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 4.8e-209 731.1 422 89.1
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 6.3e-209 730.7 419 88.5
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 8.3e-209 730.3 419 88.3
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.1e-208 729.9 420 87.9
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.1e-208 729.9 420 87.9
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.4e-208 729.6 418 89.7
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 88.2
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 88.2
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.8e-208 729.2 420 87.9
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 2.4e-208 728.8 420 88.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.4e-208 727.6 418 89.2
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.6e-207 726.1 419 87.6
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.6e-207 726.1 422 87.4
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.4
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.7e-207 725.3 422 87.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.7e-207 725.3 419 87.8
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.5e-207 724.9 421 88.1
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 3.5e-207 724.9 418 89.0
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.5e-207 724.5 418 87.8
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 5.9e-207 724.2 419 87.8
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 7.7e-207 723.8 422 87.7
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.0e-206 723.4 421 88.1
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.0e-206 723.4 422 87.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 87.7
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.3e-206 723.0 418 87.6
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 87.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-206 722.6 422 87.9
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.7e-206 722.6 422 87.9
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.7
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.7
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.9e-206 721.8 422 87.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.9e-206 721.8 422 87.4
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 3.8e-206 721.5 422 87.2
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 8.6e-206 720.3 418 87.8
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.1e-205 719.9 422 87.7
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-205 719.9 470 80.0
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-205 719.9 470 80.0
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.1e-205 719.9 418 88.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-205 719.9 437 84.7
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-205 719.5 433 86.6
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 87.4
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.9e-205 719.2 418 87.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 87.4
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 87.4
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.2e-205 718.4 418 88.0
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 4.2e-205 718.0 422 86.7
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 4.2e-205 718.0 422 87.4
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 5.5e-205 717.6 419 87.6
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 5.5e-205 717.6 430 85.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 88.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 86.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 1.6e-204 716.1 418 87.3
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.1e-204 715.7 422 87.0
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 418 87.3
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.8e-204 715.3 439 85.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.8e-204 715.3 418 86.6
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.0e-204 713.8 427 87.6
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.0e-203 713.4 422 85.3
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.4e-203 713.0 418 88.3
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 85.5
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.0e-203 711.8 451 83.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 85.3
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 86.3
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 86.8
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.0e-202 709.1 422 86.0
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.6e-202 708.8 419 86.4
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 5.7e-202 707.6 422 85.1
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 7.5e-202 707.2 418 86.1
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.4e-200 702.2 422 84.1
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 3.1e-200 701.8 422 84.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 4.1e-200 701.4 422 86.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 3.5e-199 698.4 422 83.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 7.3e-197 690.6 424 83.5
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.0e-195 684.9 428 82.0
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.4e-194 681.4 422 83.9
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.1e-192 674.9 468 78.8
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 9.2e-192 673.7 501 72.9
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-191 672.9 412 83.0
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.7e-191 672.2 388 88.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.9e-191 671.0 374 89.8
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.8e-191 670.6 420 82.9
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.7e-188 661.4 417 83.5
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 9.2e-184 647.1 389 84.6
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 6.0e-183 644.4 377 84.6
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.3e-182 643.3 363 89.8
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 9.5e-181 637.1 372 86.0
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.2e-178 630.2 397 80.1
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 5.4e-176 621.3 405 78.0
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.7e-175 619.0 422 78.4
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.6e-172 609.8 415 75.4
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.4e-168 595.9 410 76.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 7.1e-168 594.3 397 74.3
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 6.6e-166 587.8 331 88.8
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.0e-158 562.4 310 92.3
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.6e-146 522.7 407 65.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.6e-143 513.5 396 64.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.1e-143 513.1 396 65.9
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.9e-139 498.0 284 87.3
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 3.4e-138 495.7 280 91.4
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.4e-137 491.1 459 62.3
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 3.4e-130 469.2 392 67.9
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 9.7e-125 451.1 260 86.9
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-120 437.6 243 92.6
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.0e-110 404.4 236 83.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.4e-107 393.3 224 87.5
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.4e-101 372.5 249 75.5
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.5e-97 358.6 205 88.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.9e-88 330.5 287 63.8
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 2.3e-73 280.4 293 51.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-67 261.2 207 66.2
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 2.3e-65 253.8 147 85.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 1.6e-58 231.1 191 60.2
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 4.6e-50 203.0 133 73.7
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.8e-50 202.2 181 65.2
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 4.0e-46 189.9 114 91.2
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 6.0e-42 176.0 119 71.4
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.4e-38 164.9 149 62.4
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.5e-37 161.4 289 36.7
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.2e-36 157.5 106 75.5
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 2.4e-35 154.1 157 59.2
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 3.2e-35 153.7 157 58.6
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.1e-30 137.1 80 86.2
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-28 129.8 179 40.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 4.3e-24 116.7 149 49.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.0e-21 107.8 68 76.5
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.2e-15 87.8 97 53.6
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 4.1e-14 83.6 50 92.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 6.9e-14 82.8 49 89.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.1e-11 75.5 40 97.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.9e-09 67.0 37 89.2
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 2.5e-08 64.3 62 51.6
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.7e-07 61.6 112 35.7
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.7e-07 60.5 110 35.5
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 3.7e-07 60.5 319 23.5
Pp3c2_3730 Physcomitrium patens HOM05D002061 ORTHO05D002849 3.7e-07 60.5 416 24.8
MELO3C010675.2 Cucumis melo HOM05D002061 ORTHO05D002849 1.4e-06 58.5 416 24.0
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 2.4e-06 57.8 416 24.0
CsaV3_2G024770 Cucumis sativus L. HOM05D002061 ORTHO05D002849 3.1e-06 57.4 416 24.0
Psat2g102280 Pisum sativum HOM05D002061 ORTHO05D002849 3.1e-06 57.4 413 24.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.1e-06 57.4 415 24.3
VMungo1080G1323 Vigna mungo HOM05D002061 ORTHO05D002849 3.1e-06 57.4 415 24.3
Manes.13G027700 Manihot esculenta HOM05D002061 ORTHO05D002849 4.1e-06 57.0 413 23.7


User provided reference genes

Program Settings