Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 2279.6 1185 100.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 0.0e+00 1966.8 1214 84.7
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1357.8 1196 61.6
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1274.2 1199 58.7
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1245.7 1193 59.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1208.7 1201 55.6
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1207.2 1192 59.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1205.3 1194 54.9
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1204.1 1172 58.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1201.4 1190 56.3
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1193.3 1189 56.8
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1187.6 1225 56.9
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1152.5 1221 53.2
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1144.8 1185 55.8
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1125.5 1201 53.5
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1090.9 1200 53.2
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1090.1 1195 52.8
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 0.0e+00 1090.1 1205 53.2
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1085.9 1196 52.9
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1083.6 1207 53.5
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 8.1e-312 1074.3 1217 52.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.6e-311 1072.8 1206 53.2
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 3.6e-310 1068.5 1067 56.7
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.0e-308 1062.8 1207 53.0
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.2e-307 1059.3 993 57.3
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.1e-306 1057.0 993 57.4
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 9.5e-303 1043.9 1197 48.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.1e-298 1030.4 1191 52.0
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.3e-296 1022.7 1062 55.2
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 8.6e-296 1020.8 1254 49.8
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 2.5e-295 1019.2 1239 49.1
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.4e-293 1013.4 1317 47.2
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 2.0e-292 1009.6 1194 48.0
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 6.4e-291 1004.6 1197 48.5
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.3e-291 1004.2 1203 47.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.0e-288 995.7 1268 47.2
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 8.6e-288 994.2 1174 48.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.2e-286 990.3 1221 47.2
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 5.2e-285 984.9 1198 46.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 5.8e-284 981.5 1259 46.9
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 9.9e-284 980.7 1193 48.4
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 7.1e-282 974.5 1193 46.3
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.3e-280 969.5 1200 48.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.5e-279 966.1 1201 46.7
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 2.5e-279 966.1 1204 48.3
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 8.1e-278 961.1 1293 45.6
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 8.1e-278 961.1 1193 47.5
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.4e-277 960.3 1202 45.9
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.9e-275 951.8 1190 49.0
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 6.4e-275 951.4 1230 45.4
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 3.2e-274 949.1 1195 46.4
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.5e-273 945.7 1211 47.8
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 7.8e-273 944.5 1215 47.2
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.0e-272 944.1 1204 46.3
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.9e-272 942.2 1215 46.9
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 5.1e-272 941.8 954 53.6
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.1e-271 940.6 1197 48.5
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 4.7e-270 935.3 1209 45.0
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 4.7e-270 935.3 1194 48.4
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 9.0e-269 931.0 1178 45.6
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 9.0e-269 931.0 1195 46.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 4.4e-268 928.7 1235 46.2
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 9.9e-268 927.5 1249 45.7
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.7e-267 926.8 1191 45.4
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.7e-267 926.8 1198 45.1
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.1e-266 924.1 1281 46.6
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 4.2e-266 922.2 941 54.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 9.3e-266 921.0 1194 45.0
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 4.6e-265 918.7 1268 42.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-264 916.8 1287 44.4
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-261 907.5 1197 44.0
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.2e-260 904.0 644 69.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.2e-260 904.0 1219 45.3
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 9.9e-260 901.0 1189 46.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.7e-259 900.2 1188 45.7
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 5.6e-255 885.2 1284 46.0
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-253 880.9 1265 43.9
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.8e-253 880.2 1122 49.6
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.1e-253 879.4 1153 46.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 4.0e-253 879.0 1153 46.0
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.5e-252 877.1 1124 46.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 3.3e-247 859.4 1212 43.5
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 6.2e-246 855.1 1209 43.1
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.5e-244 850.5 1211 43.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 2.0e-244 850.1 918 51.9
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.3e-240 837.4 1180 43.1
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 7.4e-239 831.6 1222 41.7
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 2.8e-238 829.7 1192 42.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.5e-236 823.9 986 50.8
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 3.0e-232 809.7 1125 44.2
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.1e-229 799.7 702 57.1
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 9.1e-229 798.1 1218 44.0
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 9.1e-229 798.1 1218 44.0
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.7e-219 767.3 1233 40.9
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.2e-219 766.9 913 48.1
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 9.1e-213 745.0 1130 41.8
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 2.6e-212 743.4 632 60.9
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 9.4e-210 734.9 1155 41.6
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 3.0e-208 729.9 955 47.0
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 5.5e-202 709.1 1096 40.9
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.8e-200 704.1 637 57.5
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.7e-198 697.6 1158 42.6
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.7e-198 697.6 1046 42.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 6.1e-193 679.1 771 49.8
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.5e-180 636.7 956 42.2
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.3e-179 634.0 639 54.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.8e-158 563.5 653 49.9
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-156 558.1 510 58.0
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.7e-156 557.4 879 42.0
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 9.9e-151 538.9 853 41.3
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-150 537.7 779 43.1
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.1e-149 532.7 428 63.6
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.7e-116 424.5 961 35.6
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 3.9e-115 420.6 961 35.4
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 3.8e-110 404.1 730 36.2
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 7.9e-108 396.4 722 36.6
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.6e-103 381.3 343 58.3
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.9e-101 375.2 607 41.2
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-100 371.3 634 40.1
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 6.1e-100 370.2 1066 30.6
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.3e-99 368.2 315 61.3
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 8.2e-97 359.8 304 62.5
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.7e-86 325.5 291 57.4
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-85 322.8 294 57.8
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.2e-73 282.0 525 44.2
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.0e-67 261.2 349 43.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.1e-64 251.1 411 35.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.9e-57 228.4 606 36.5
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 4.4e-34 151.4 536 28.4
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 5.8e-34 151.0 188 53.2
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 6.4e-33 147.5 269 35.7
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 6.0e-31 141.0 106 68.9
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.9e-24 119.4 296 27.7
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 7.9e-23 114.0 263 33.8
Potri.016G125901 Populus trichocarpa HOM05D005064 ORTHO05D050424 2.1e-15 89.4 77 63.6
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.9e-09 68.9 204 30.4
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 6.1e-07 61.2 143 35.7
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.0e-06 60.5 117 36.8
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 8.7e-06 57.4 46 60.9


User provided reference genes

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