Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 7.8e-297 1023.1 535 100.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 4.0e-277 957.6 536 95.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.8e-270 934.1 535 89.5
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.4e-239 831.2 538 79.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 2.2e-230 802.4 523 78.2
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 6.5e-227 790.8 530 78.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.2e-225 786.6 542 76.2
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.2e-225 786.6 540 76.1
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.8e-222 775.4 523 76.3
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 9.5e-218 760.4 542 72.9
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.8e-214 748.8 530 73.0
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 2.8e-214 748.8 530 73.0
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 2.8e-214 748.8 548 73.5
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 4.1e-213 745.0 528 72.9
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.7e-212 742.3 548 72.8
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 1.8e-205 719.5 523 70.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 6.8e-200 701.0 527 66.4
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 1.5e-199 699.9 521 72.2
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 3.4e-199 698.7 516 72.9
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 5.8e-199 698.0 549 70.7
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 7.5e-199 697.6 516 72.7
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 9.8e-199 697.2 516 72.7
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 6.4e-198 694.5 518 72.4
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 8.3e-198 694.1 526 66.3
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.1e-197 693.7 527 68.1
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.4e-197 693.3 528 70.3
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 1.9e-197 693.0 516 72.7
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 5.4e-197 691.4 532 70.5
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.2e-196 690.3 524 66.8
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.2e-196 690.3 524 66.8
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.6e-196 689.9 532 70.3
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 2.7e-196 689.1 528 70.1
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.3e-195 686.8 527 69.6
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.1e-194 683.7 528 67.4
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 1.9e-194 682.9 527 67.2
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.9e-194 682.9 529 68.1
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.3e-194 682.2 531 65.3
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.3e-194 681.8 530 67.9
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 3.6e-193 678.7 528 66.7
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 4.7e-193 678.3 527 70.4
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 6.2e-193 677.9 536 64.2
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 3.1e-192 675.6 543 70.3
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.8e-192 674.5 529 67.3
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 8.9e-192 674.1 545 70.1
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 2.0e-191 672.9 527 67.0
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.4e-191 672.2 544 70.0
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 7.5e-191 671.0 525 64.2
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 9.9e-191 670.6 516 68.8
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.3e-190 670.2 545 69.7
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.3e-190 670.2 530 64.9
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 1.1e-189 667.2 531 67.2
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.4e-189 666.0 531 65.2
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 4.6e-188 661.8 528 67.6
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 4.6e-188 661.8 528 67.6
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.3e-187 659.4 544 69.5
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 9.5e-186 654.1 523 64.6
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 6.2e-185 651.4 526 63.3
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 1.4e-184 650.2 540 62.0
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 2.6e-183 646.0 532 62.0
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 3.4e-183 645.6 521 62.6
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 9.9e-183 644.0 481 66.9
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.7e-182 643.3 532 64.1
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 3.8e-182 642.1 532 65.8
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 4.9e-182 641.7 541 61.2
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 9.2e-181 637.5 521 64.9
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.7e-179 633.3 522 63.8
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 5.1e-179 631.7 523 62.1
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.2e-175 620.5 530 64.0
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 2.6e-175 619.4 525 61.0
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 2.6e-175 619.4 528 64.6
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 4.4e-175 618.6 531 61.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.9e-173 613.2 525 60.2
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 3.2e-173 612.5 542 62.0
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.7e-172 609.4 525 59.8
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.6e-172 608.6 535 59.1
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 7.8e-172 607.8 534 59.2
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 1.3e-171 607.1 526 60.6
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.3e-171 607.1 527 60.7
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.3e-171 607.1 535 58.9
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.3e-169 600.5 519 63.8
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.9e-166 589.3 526 61.0
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.1e-165 587.4 493 63.9
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.2e-165 585.5 523 58.9
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.7e-163 577.8 526 59.9
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.1e-162 577.4 531 61.2
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.3e-162 575.5 526 60.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 9.6e-162 574.3 526 60.5
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 1.6e-161 573.5 528 58.5
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.8e-161 572.8 528 60.0
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 6.9e-160 568.2 532 54.7
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 9.0e-160 567.8 528 59.5
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 5.8e-159 565.1 516 60.3
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 1.4e-157 560.5 521 59.9
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.3e-154 548.9 522 59.4
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 1.9e-149 533.5 524 57.3
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 5.5e-149 531.9 524 57.3
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 4.6e-148 528.9 530 58.9
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.1e-146 524.2 523 55.4
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 1.4e-144 517.3 529 57.1
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 3.4e-143 512.7 546 54.2
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 4.6e-140 502.3 326 77.0
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.1e-138 497.7 502 55.4
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 1.9e-133 480.3 532 51.7
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.4e-128 464.2 523 48.2
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 3.2e-125 453.0 521 49.1
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 2.9e-118 429.9 534 46.8
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 5.5e-117 425.6 533 47.3
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.3e-97 361.3 380 54.5
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 4.1e-96 356.3 421 49.9
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 4.4e-90 336.3 521 44.9
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 6.8e-83 312.4 518 38.8
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 4.9e-81 306.2 336 46.1
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 4.9e-81 306.2 274 54.4
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 2.5e-77 293.9 527 37.6
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 5.6e-77 292.7 520 36.3
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 2.0e-74 284.3 509 36.5
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.2e-73 280.8 345 46.4
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 7.8e-55 219.2 525 29.5
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 3.3e-53 213.8 420 32.1
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.3e-52 211.8 345 37.7
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.2e-47 195.3 224 51.3
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 2.1e-47 194.5 180 56.1
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 4.0e-43 180.3 222 48.2
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 6.0e-39 166.4 100 78.0
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.9e-38 163.7 505 29.7
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 4.5e-34 150.2 102 73.5
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.3e-28 132.1 116 56.9
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 8.5e-25 119.4 119 54.6
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 4.3e-21 107.1 157 45.9
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 2.8e-20 104.4 163 44.2
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.1e-19 102.4 139 47.5
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.1e-16 92.4 70 67.1
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.4e-14 85.5 63 61.9
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 6.7e-14 83.2 121 39.7
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 7.0e-11 73.2 167 31.7
CDE03G0436 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 1.0e-09 69.3 216 24.1
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 1.3e-09 68.9 252 26.2
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 2.9e-09 67.8 115 36.5
CDE04G2061 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 1.1e-08 65.9 143 28.7
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 1.1e-08 65.9 115 33.9
Atru.chr12.2297 Acer truncatum HOM05D005151 ORTHO05D006322 2.5e-08 64.7 115 34.8
PGSC0003DMG400003474 Solanum tuberosum HOM05D005544 ORTHO05D003203 2.5e-08 64.7 51 52.9
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 3.2e-08 64.3 115 33.0
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 3.2e-08 64.3 115 33.0
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 4.2e-08 63.9 115 34.8
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 5.5e-08 63.5 70 45.7
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.6e-07 62.0 120 36.7
Cre13.g602700 Chlamydomonas reinhardtii HOM05D000684 ORTHO05D000688 2.1e-07 61.6 145 27.6
Medtr2g014020 Medicago truncatula HOM05D000836 ORTHO05D000709 2.1e-07 61.6 188 27.7
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 2.1e-07 61.6 115 33.0
Lsat_1_v5_gn_5_55560 Lactuca sativa HOM05D000684 ORTHO05D000688 8.0e-07 59.7 143 25.9
Zm00001eb361760 Zea mays HOM05D000684 ORTHO05D000688 8.0e-07 59.7 219 24.2
EL10Ac5g12880 Beta vulgaris HOM05D000684 ORTHO05D000688 1.0e-06 59.3 222 23.0
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 1.0e-06 59.3 150 31.3
CiPaw.03G210900 Carya illinoinensis HOM05D005151 ORTHO05D006322 1.4e-06 58.9 115 32.2
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 1.4e-06 58.9 143 26.6
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 2.3e-06 58.2 118 32.2
Pp3c16_19410 Physcomitrium patens HOM05D000684 ORTHO05D000688 3.0e-06 57.8 149 24.8
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 3.9e-06 57.4 101 38.6
TWI18G0734 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 3.9e-06 57.4 143 24.5
Lsat_1_v5_gn_5_123420 Lactuca sativa HOM05D000684 ORTHO05D000688 5.2e-06 57.0 143 24.5
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 6.7e-06 56.6 171 30.4
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 6.7e-06 56.6 118 31.4
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 6.7e-06 56.6 105 34.3
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 8.8e-06 56.2 191 24.6


User provided reference genes

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