Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G045700 Populus trichocarpa HOM05D001636 ORTHO05D003817 5.1e-44 180.6 88 100.0
SGA_v2.0_scaffold198G41149 Striga asiatica HOM05D001636 ORTHO05D003817 1.1e-09 66.6 52 67.3
MSTRG.18149 Avicennia marina HOM05D001636 ORTHO05D003817 2.4e-09 65.5 52 65.4
SalBow1G5633 Salvia bowleyana HOM05D001636 ORTHO05D003817 4.1e-09 64.7 52 65.4
Migut.B01153 Erythranthe guttata HOM05D001636 ORTHO05D003817 5.3e-09 64.3 52 65.4
Migut.D00220 Erythranthe guttata HOM05D001636 ORTHO05D003817 5.3e-09 64.3 52 65.4
Migut.O00746 Erythranthe guttata HOM05D001636 ORTHO05D003817 5.3e-09 64.3 52 65.4
Glyma.20G204200 Glycine max HOM05D001636 ORTHO05D003817 5.3e-09 64.3 50 68.0
Ciclev10022968m.g Citrus clementina HOM05D001636 ORTHO05D003817 6.9e-09 63.9 50 68.0
Lj4g0004237 Lotus japonicus HOM05D001636 ORTHO05D003817 6.9e-09 63.9 50 68.0
CSS0016701 Camellia sinensis var. sinensis HOM05D001636 ORTHO05D003817 9.1e-09 63.5 50 68.0
Eucgr.H01111 Eucalyptus grandis HOM05D001636 ORTHO05D003817 1.2e-08 63.2 50 68.0
Atru.chr5.1147 Acer truncatum HOM05D001636 ORTHO05D003817 1.5e-08 62.8 50 68.0
Glyma.05G240800 Glycine max HOM05D001636 ORTHO05D003817 1.5e-08 62.8 50 66.0
Glyma.10G186300 Glycine max HOM05D001636 ORTHO05D003817 1.5e-08 62.8 50 66.0
SalBow3G4558 Salvia bowleyana HOM05D001636 ORTHO05D003817 1.5e-08 62.8 51 64.7
Cpa.g.sc9.261 Carica papaya HOM05D001636 ORTHO05D003817 2.0e-08 62.4 50 64.0
TWI59G1425 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 2.0e-08 62.4 50 66.0
unitig_8.g3705 Utricularia gibba HOM05D001636 ORTHO05D003817 2.0e-08 62.4 52 63.5
Actinidia24823 Actinidia chinensis HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 66.0
CiPaw.08G095300 Carya illinoinensis HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 66.0
Lalb_Chr16g0387431 Lupinus albus HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 64.0
Potri.002G204300 Populus trichocarpa HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 66.0
Potri.014G129100 Populus trichocarpa HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 66.0
TAR362G1299 Trochodendron aralioides HOM05D001636 ORTHO05D003817 3.4e-08 61.6 50 68.0
BcaC07g40754 Brassica carinata HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
BcaC07g40757 Brassica carinata HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
BcaC07g42737 Brassica carinata HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
BcaC08g45241 Brassica carinata HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
Sp5g00670 Schrenkiella parvula HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
Sc22g0002940 Simmondsia chinensis HOM05D001636 ORTHO05D003817 4.5e-08 61.2 50 64.0
HanXRQChr03g0075541 Helianthus annuus HOM05D001636 ORTHO05D003817 5.9e-08 60.8 50 66.0
HanXRQChr04g0114501 Helianthus annuus HOM05D001636 ORTHO05D003817 5.9e-08 60.8 50 66.0
Psat4g004600 Pisum sativum HOM05D001636 ORTHO05D003817 5.9e-08 60.8 50 64.0
Sabra02G0154900 Salix brachista HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 64.0
Sabra14G0095900 Salix brachista HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 64.0
Hund18161 Selenicereus undatus HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 64.0
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 62.0
TWI14G1361 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 64.0
vmacro02450 Vaccinium macrocarpon HOM05D001636 ORTHO05D003817 7.7e-08 60.5 50 64.0
Aa31LG10G16540 Aethionema arabicum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 62.0
AT2G47640 Arabidopsis thaliana HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 62.0
Carub.0004s3037 Capsella rubella HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 62.0
CARHR143040 Cardamine hirsuta HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 62.0
ClCG07G008500 Citrullus lanatus HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
Gohir.D13G026500 Gossypium hirsutum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
Gorai.013G029800 Gossypium raimondii HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
Lj4g0026328 Lotus japonicus HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
PSO170G3858 Papaver somniferum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
PSO407G0057 Papaver somniferum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
PSO541G0142 Papaver somniferum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
PSO675G8449 Papaver somniferum HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
Sed0009058 Sechium edule HOM05D001636 ORTHO05D003817 1.0e-07 60.1 50 64.0
MSTRG.21635 Avicennia marina HOM05D001636 ORTHO05D003817 1.3e-07 59.7 52 59.6
CSS0040607 Camellia sinensis var. sinensis HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
Nn3g21491 Nelumbo nucifera HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
Peaxi162Scf00001g00434 Petunia axillaris HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
Phvul.011G008300 Phaseolus vulgaris HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
Rhsim13G0010100 Rhododendron simsii HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
TAR365G0771 Trochodendron aralioides HOM05D001636 ORTHO05D003817 1.3e-07 59.7 50 64.0
HanXRQChr06g0163781 Helianthus annuus HOM05D001636 ORTHO05D003817 1.7e-07 59.3 50 64.0
Lalb_Chr09g0330771 Lupinus albus HOM05D001636 ORTHO05D003817 1.7e-07 59.3 50 62.0
Nitab4.5_0001879g0090 Nicotiana tabacum HOM05D001636 ORTHO05D003817 1.7e-07 59.3 50 64.0
unitig_22.g5240 Utricularia gibba HOM05D001636 ORTHO05D003817 1.7e-07 59.3 48 64.6
EL10Ac7g17470 Beta vulgaris HOM05D001636 ORTHO05D003817 2.2e-07 58.9 48 64.6
BcaB02g07316 Brassica carinata HOM05D001636 ORTHO05D003817 2.2e-07 58.9 49 63.3
CDE02G3049 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 2.2e-07 58.9 50 62.0
Ca_17251_v3 Cicer arietinum L. HOM05D001636 ORTHO05D003817 2.2e-07 58.9 46 67.4
Phvul.002G324000 Phaseolus vulgaris HOM05D001636 ORTHO05D003817 2.2e-07 58.9 50 64.0
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 2.9e-07 58.5 54 61.1
MELO3C016382.2 Cucumis melo HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
CsaV3_4G005660 Cucumis sativus L. HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Lalb_Chr05g0222071 Lupinus albus HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Manes.17G085700 Manihot esculenta HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Oeu046678.1 Olea europaea HOM05D001636 ORTHO05D003817 2.9e-07 58.5 48 64.6
Sed0005968 Sechium edule HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Solyc09g075130.3 Solanum lycopersicum HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Sopen09g029950 Solanum pennellii HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
Thecc.02G307800 Theobroma cacao HOM05D001636 ORTHO05D003817 2.9e-07 58.5 50 62.0
arahy.Tifrunner.gnm1.ann1.011XRQ Arachis hypogaea HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
arahy.Tifrunner.gnm1.ann1.B57D01 Arachis hypogaea HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Duzib251G0676 Durio zibethinus HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Gohir.A05G307866 Gossypium hirsutum HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Gohir.D05G308200 Gossypium hirsutum HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Nn4g25788 Nelumbo nucifera HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Nitab4.5_0002640g0010 Nicotiana tabacum HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
Sp4g29580 Schrenkiella parvula HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
THA.LOC104817495 Tarenaya hassleriana HOM05D001636 ORTHO05D003817 3.8e-07 58.2 50 62.0
AL5G45620 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 5.0e-07 57.8 50 60.0
BcaC08g46403 Brassica carinata HOM05D001636 ORTHO05D003817 5.0e-07 57.8 48 58.3
C06p43360 Brassica napus HOM05D001636 ORTHO05D003817 5.0e-07 57.8 48 58.3
CARHR173110 Cardamine hirsuta HOM05D001636 ORTHO05D003817 5.0e-07 57.8 49 61.2
Thhalv10006266m.g Eutrema salsugineum HOM05D001636 ORTHO05D003817 5.0e-07 57.8 50 62.0
MBI19_g25358_MAGBIO Magnolia biondii HOM05D001636 ORTHO05D003817 5.0e-07 57.8 49 65.3
Rhsim01G0285100 Rhododendron simsii HOM05D001636 ORTHO05D003817 5.0e-07 57.8 48 64.6
Ah.15g093180 Amaranthus hybridus HOM05D001636 ORTHO05D003817 6.5e-07 57.4 46 65.2
BolC6t39413H Brassica oleracea HOM05D001636 ORTHO05D003817 6.5e-07 57.4 46 60.9
Cc01_g20840 Coffea canephora HOM05D001636 ORTHO05D003817 6.5e-07 57.4 50 60.0
Gohir.A13G027700 Gossypium hirsutum HOM05D001636 ORTHO05D003817 6.5e-07 57.4 50 62.0
Prupe.7G149600 Prunus persica HOM05D001636 ORTHO05D003817 6.5e-07 57.4 50 60.0
RcHm_v2.0_Chr7g0203251 Rosa chinensis HOM05D001636 ORTHO05D003817 6.5e-07 57.4 50 60.0
Aa31LG1G28980 Aethionema arabicum HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 8.5e-07 57.0 50 60.0
FvH4_5g18870 Fragaria vesca HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
FAN04G2283 Fragaria x ananassa HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
FAN08G0307 Fragaria x ananassa HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
FAN18G3048 Fragaria x ananassa HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
FAN18G3940 Fragaria x ananassa HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
MD02G1152600 Malus domestica HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
MD15G1267000 Malus domestica HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
Manes.15G136700 Manihot esculenta HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
Prupe.8G230200 Prunus persica HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
QL12p028476 Quercus lobata HOM05D001636 ORTHO05D003817 8.5e-07 57.0 46 65.2
THA.LOC104802174 Tarenaya hassleriana HOM05D001636 ORTHO05D003817 8.5e-07 57.0 50 60.0
BcaB02g08095 Brassica carinata HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
BcaC02g10316 Brassica carinata HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
CANSAT35G0165 Cannabis sativa HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
CDE02G4544 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
CDE08G0313 Ceratophyllum demersum HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
DCAR_005793 Daucus carota HOM05D001636 ORTHO05D003817 1.1e-06 56.6 49 61.2
Duzib248G0729 Durio zibethinus HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
Thhalv10001688m.g Eutrema salsugineum HOM05D001636 ORTHO05D003817 1.1e-06 56.6 50 60.0
Hma1.2p1_1471F.1_g285650 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 1.1e-06 56.6 49 61.2
TWI23G0966 Tripterygium wilfordii HOM05D001636 ORTHO05D003817 1.1e-06 56.6 49 61.2
unitig_26.g10172 Utricularia gibba HOM05D001636 ORTHO05D003817 1.1e-06 56.6 51 56.9
Aqoxy2G04061 Aquilegia oxysepala HOM05D001636 ORTHO05D003817 1.4e-06 56.2 50 62.0
BcaNung06225 Brassica carinata HOM05D001636 ORTHO05D003817 1.4e-06 56.2 46 60.9
Migut.B01154 Erythranthe guttata HOM05D001636 ORTHO05D003817 1.4e-06 56.2 48 62.5
Aqoxy5G00757 Aquilegia oxysepala HOM05D001636 ORTHO05D003817 1.9e-06 55.8 50 62.0
CAN.G472.4 Capsicum annuum HOM05D001636 ORTHO05D003817 1.9e-06 55.8 50 64.0
Gorai.009G328400 Gossypium raimondii HOM05D001636 ORTHO05D003817 1.9e-06 55.8 49 61.2
AT3G62840 Arabidopsis thaliana HOM05D001636 ORTHO05D003817 2.5e-06 55.5 50 58.0
GSVIVG01011627001 Vitis vinifera HOM05D001636 ORTHO05D003817 2.5e-06 55.5 36 75.0
DCAR_002834 Daucus carota HOM05D004397 ORTHO05D005271 3.2e-06 55.1 47 61.7
ECA236G0463 Erigeron canadensis HOM05D001636 ORTHO05D003817 3.2e-06 55.1 46 65.2
VMungo0251G2599 Vigna mungo HOM05D001636 ORTHO05D003817 3.2e-06 55.1 46 63.0
GSVIVG01028015001 Vitis vinifera HOM05D001636 ORTHO05D003817 3.2e-06 55.1 46 65.2
BraA04t15770Z Brassica rapa HOM05D001636 ORTHO05D003817 4.2e-06 54.7 46 63.0
FAN23G1648 Fragaria x ananassa HOM05D001636 ORTHO05D003817 4.2e-06 54.7 35 68.6
Manes.05G062000 Manihot esculenta HOM05D001636 ORTHO05D003817 4.2e-06 54.7 46 60.9
VMungo1127G0954 Vigna mungo HOM05D001636 ORTHO05D003817 4.2e-06 54.7 45 66.7
Atru.chr11.834 Acer truncatum HOM05D001636 ORTHO05D003817 5.5e-06 54.3 48 60.4
ATR0706G006 Amborella trichopoda HOM05D001636 ORTHO05D003817 5.5e-06 54.3 46 65.2
Carub.0005s2950 Capsella rubella HOM05D001636 ORTHO05D003817 5.5e-06 54.3 50 56.0
AUR62008674 Chenopodium quinoa HOM05D001636 ORTHO05D003817 5.5e-06 54.3 45 62.2
AUR62018541 Chenopodium quinoa HOM05D001636 ORTHO05D003817 5.5e-06 54.3 45 62.2
AUR62025572 Chenopodium quinoa HOM05D001636 ORTHO05D003817 5.5e-06 54.3 45 62.2
Ciclev10017261m.g Citrus clementina HOM05D001636 ORTHO05D003817 5.5e-06 54.3 49 61.2
Os05g0314100 Oryza sativa ssp. japonica HOM05D001636 ORTHO05D003817 5.5e-06 54.3 36 72.2
Zm00001eb077210 Zea mays HOM05D001636 ORTHO05D003817 5.5e-06 54.3 36 72.2
Zm00001eb426700 Zea mays HOM05D001636 ORTHO05D003817 5.5e-06 54.3 36 72.2
C08p37590 Brassica napus HOM05D001550 ORTHO05D001611 7.2e-06 53.9 49 61.2
Cpa.g.sc2.167 Carica papaya HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
Haze_04938 Corylus avellana HOM05D000286 ORTHO05D003817 7.2e-06 53.9 36 72.2
Haze_10849 Corylus avellana HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
Dinv33054 Davidia involucrata HOM05D000286 ORTHO05D000170 7.2e-06 53.9 41 63.4
ECA247G2756 Erigeron canadensis HOM05D001636 ORTHO05D003817 7.2e-06 53.9 38 68.4
Hma1.2p1_0494F.1_g165180 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
Hma1.2p1_1471F.1_g285655 Hydrangea macrophylla HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
Medtr8g105890 Medicago truncatula HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
QL03p037965 Quercus lobata HOM05D001636 ORTHO05D003817 7.2e-06 53.9 36 72.2
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 7.2e-06 53.9 35 71.4
Ah.08g213440 Amaranthus hybridus HOM05D001636 ORTHO05D003817 9.4e-06 53.5 48 58.3
Mapoly0037s0122 Marchantia polymorpha HOM05D001636 ORTHO05D003817 9.4e-06 53.5 49 59.2
Pp3c10_17640 Physcomitrium patens HOM05D001636 ORTHO05D003817 9.4e-06 53.5 49 59.2
Pp3c12_17690 Physcomitrium patens HOM05D001636 ORTHO05D003817 9.4e-06 53.5 49 59.2
PGR042G3902 Punica granatum HOM05D001636 ORTHO05D003817 9.4e-06 53.5 46 63.0
HPP92_011491 Vanilla planifolia HOM05D001636 ORTHO05D003817 9.4e-06 53.5 36 69.4


User provided reference genes

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