Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G092250 Populus trichocarpa HOM05D003132 ORTHO05D003736 9.7e-107 390.2 201 100.0
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 7.5e-51 204.5 201 62.7
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.7e-50 202.2 206 61.2
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.1e-44 184.1 204 53.4
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 1.5e-43 180.3 194 55.2
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 1.3e-42 177.2 197 55.3
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 1.7e-42 176.8 197 55.3
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 1.9e-41 173.3 195 53.8
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 5.4e-41 171.8 211 53.1
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.6e-40 170.2 199 52.3
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 3.5e-40 169.1 202 52.0
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 1.3e-39 167.2 193 52.8
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.7e-39 166.8 196 51.5
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 1.7e-39 166.8 200 51.5
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 2.3e-39 166.4 197 51.3
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.3e-39 166.4 197 51.3
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 6.6e-39 164.9 192 51.6
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 8.6e-39 164.5 192 53.1
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-38 164.1 189 51.3
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.5e-38 163.7 199 50.3
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.9e-38 163.3 201 50.7
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.5e-38 162.9 192 51.6
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 4.3e-38 162.2 192 50.5
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 7.3e-38 161.4 199 49.7
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 1.6e-37 160.2 189 51.3
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 8.1e-37 157.9 202 48.5
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 1.8e-36 156.8 192 50.0
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 3.4e-35 152.5 197 48.2
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 4.4e-35 152.1 192 49.0
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 9.9e-35 151.0 189 50.3
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 9.9e-35 151.0 200 47.5
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 2.2e-34 149.8 181 50.3
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 2.9e-34 149.4 201 47.3
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 2.9e-34 149.4 201 47.3
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 3.7e-34 149.1 194 46.9
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 4.6e-32 142.1 183 48.6
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 2.8e-29 132.9 197 44.7
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 1.4e-28 130.6 191 42.4
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 8.9e-28 127.9 206 40.3
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.0e-27 126.7 207 38.2
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 5.8e-27 125.2 164 47.0
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.3e-26 124.0 200 39.0
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 3.8e-26 122.5 182 40.7
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 4.9e-26 122.1 192 40.6
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 6.4e-26 121.7 185 41.1
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.4e-25 120.6 193 41.5
ATR1089G130 Amborella trichopoda HOM05D003132 ORTHO05D003736 2.4e-25 119.8 168 45.2
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.2e-25 119.4 201 42.3
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 4.2e-25 119.0 206 37.9
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 4.2e-25 119.0 191 39.3
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 5.4e-25 118.6 189 40.7
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 5.4e-25 118.6 189 40.7
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 5.4e-25 118.6 190 40.5
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 5.4e-25 118.6 206 38.3
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 7.1e-25 118.2 191 38.7
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.2e-24 117.5 189 40.2
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.2e-24 117.5 201 39.3
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.6e-24 117.1 197 39.1
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 2.1e-24 116.7 185 38.4
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 2.7e-24 116.3 206 38.3
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 2.7e-24 116.3 201 37.8
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.7e-24 116.3 190 39.5
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 3.5e-24 115.9 190 40.5
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 3.5e-24 115.9 190 40.0
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 4.6e-24 115.5 197 38.6
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 4.6e-24 115.5 185 38.9
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 4.6e-24 115.5 192 37.5
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 6.0e-24 115.2 206 37.4
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 7.8e-24 114.8 207 38.6
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.0e-23 114.4 190 38.4
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 1.0e-23 114.4 190 38.4
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 1.0e-23 114.4 198 37.4
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 1.0e-23 114.4 190 40.0
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 1.0e-23 114.4 201 38.3
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.0e-23 114.4 201 38.3
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 1.3e-23 114.0 198 37.4
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 1.3e-23 114.0 198 37.4
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 1.3e-23 114.0 198 37.4
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.3e-23 114.0 187 40.1
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 1.3e-23 114.0 185 38.4
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 1.3e-23 114.0 206 36.4
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.3e-23 114.0 206 36.9
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.3e-23 114.0 202 38.1
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 1.7e-23 113.6 198 37.4
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 1.7e-23 113.6 185 38.9
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 1.7e-23 113.6 191 38.2
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 2.3e-23 113.2 198 37.4
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 2.3e-23 113.2 192 37.5
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 2.3e-23 113.2 192 37.5
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.3e-23 113.2 185 39.5
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 3.0e-23 112.8 207 36.7
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 3.0e-23 112.8 206 37.9
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 3.0e-23 112.8 185 40.5
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 3.0e-23 112.8 208 35.1
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 3.9e-23 112.5 199 38.7
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 3.9e-23 112.5 189 37.6
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 3.9e-23 112.5 201 37.8
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 3.9e-23 112.5 190 38.4
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 3.9e-23 112.5 189 39.7
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 5.1e-23 112.1 201 38.3
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 5.1e-23 112.1 189 39.7
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 5.1e-23 112.1 201 37.3
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.6e-23 111.7 176 39.8
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 6.6e-23 111.7 185 37.8
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 8.7e-23 111.3 187 38.5
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 8.7e-23 111.3 187 38.0
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 8.7e-23 111.3 187 38.5
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 8.7e-23 111.3 189 39.2
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 8.7e-23 111.3 75 76.0
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 1.1e-22 110.9 187 38.0
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 1.1e-22 110.9 190 37.9
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.1e-22 110.9 207 33.8
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 1.1e-22 110.9 201 36.8
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 1.1e-22 110.9 189 39.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.5e-22 110.5 185 37.8
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.5e-22 110.5 190 38.4
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 1.5e-22 110.5 203 37.4
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.5e-22 110.5 189 39.2
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.5e-22 110.5 190 38.9
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 1.9e-22 110.2 190 37.9
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 1.9e-22 110.2 190 37.9
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 1.9e-22 110.2 198 37.4
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 2.5e-22 109.8 181 42.0
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 2.5e-22 109.8 227 34.8
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 3.3e-22 109.4 185 37.8
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 3.3e-22 109.4 184 40.2
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 5.6e-22 108.6 192 37.5
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 7.3e-22 108.2 192 37.5
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 9.6e-22 107.8 191 37.7
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 9.6e-22 107.8 75 73.3
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 9.6e-22 107.8 190 38.4
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.2e-21 107.5 188 38.3
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.2e-21 107.5 190 38.4
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 1.2e-21 107.5 201 35.8
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 1.6e-21 107.1 189 37.6
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.6e-21 107.1 189 37.6
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.6e-21 107.1 196 36.2
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.6e-21 107.1 190 38.4
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 2.1e-21 106.7 190 38.4
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.1e-21 106.7 190 38.4
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.1e-21 106.7 201 38.3
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 3.6e-21 105.9 201 35.8
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 4.7e-21 105.5 200 33.0
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 2.4e-20 103.2 184 38.0
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 5.3e-20 102.1 173 39.3
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 1.2e-19 100.9 178 38.2
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 2.6e-19 99.8 237 32.9
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 3.4e-19 99.4 246 32.5
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 4.4e-19 99.0 75 66.7
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 5.8e-19 98.6 191 35.6
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 1.7e-18 97.1 226 34.1
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.2e-18 96.7 201 31.8
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 2.9e-18 96.3 72 69.4
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 3.8e-18 95.9 207 30.4
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 1.1e-17 94.4 223 33.2
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 3.2e-17 92.8 174 40.2
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 3.2e-17 92.8 211 32.2
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 9.3e-17 91.3 190 35.3
SEGI_27881 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 9.3e-17 91.3 75 61.3
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 9.3e-17 91.3 239 31.0
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 3.5e-16 89.4 75 61.3
vmacro00916 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 3.5e-16 89.4 88 55.7
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 4.6e-16 89.0 75 54.7
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 1.0e-15 87.8 185 34.6
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 2.3e-15 86.7 75 65.3
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 3.9e-15 85.9 193 35.2
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 5.1e-15 85.5 267 28.5
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 6.6e-15 85.1 184 33.2
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 6.6e-15 85.1 241 29.9
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 8.7e-15 84.7 75 53.3
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 5.6e-14 82.0 75 53.3
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 7.3e-14 81.6 75 52.0
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.6e-13 80.5 75 53.3
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 4.8e-13 79.0 75 52.0
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 6.2e-13 78.6 75 50.7
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 6.2e-13 78.6 75 50.7
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.1e-12 77.8 190 33.2
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 3.4e-11 72.8 185 32.4
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 6.4e-10 68.6 174 31.6
SEGI_33020 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 2.1e-08 63.5 72 43.1
CSS0003734 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 5.1e-07 58.9 73 49.3
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 1.9e-06 57.0 195 25.6


User provided reference genes

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