Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.1e-118 429.1 220 100.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 4.3e-116 421.4 220 97.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.5e-105 386.3 249 81.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.4e-90 336.7 220 78.6
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 2.3e-85 319.3 220 73.2
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.1e-82 310.5 221 72.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.4e-82 310.1 220 71.8
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.1e-82 308.9 220 72.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 4.5e-81 305.1 220 69.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.6e-81 304.3 220 70.0
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.1e-79 300.4 221 69.7
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 7.1e-79 297.7 221 68.3
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.1e-77 291.6 220 69.1
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.1e-76 290.4 220 67.7
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-76 290.0 221 68.3
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.9e-76 289.7 220 65.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.9e-76 289.7 220 68.6
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-76 288.9 221 67.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 3.3e-76 288.9 221 67.9
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 4.3e-76 288.5 221 68.8
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 7.4e-76 287.7 220 66.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 221 67.4
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 221 67.4
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 221 67.4
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-75 286.2 221 67.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.1e-75 286.2 220 65.5
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.3e-75 284.6 221 67.0
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.3e-75 284.6 221 67.0
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-74 283.9 221 64.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-74 283.5 221 67.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-74 283.1 221 67.0
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.8e-74 283.1 205 69.8
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 9.0e-74 280.8 217 66.8
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.7e-72 276.6 223 63.2
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 6.5e-72 274.6 220 65.5
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.4e-71 273.5 219 63.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.4e-71 273.5 220 63.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.9e-71 273.1 222 62.6
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 5.5e-71 271.6 220 62.7
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 7.2e-71 271.2 220 63.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 3.6e-70 268.9 219 62.6
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.1e-70 268.1 215 63.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.0e-69 267.3 221 63.3
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.8e-69 266.5 234 58.5
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.3e-69 266.2 220 65.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.0e-69 265.8 219 61.6
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.0e-69 265.8 214 63.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.0e-69 265.8 219 62.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 3.9e-69 265.4 220 61.8
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 8.7e-69 264.2 219 61.6
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 8.7e-69 264.2 219 61.6
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 8.7e-69 264.2 219 61.6
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.1e-68 263.8 224 62.5
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.5e-68 263.5 219 61.2
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.9e-68 263.1 219 61.6
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.9e-68 263.1 224 61.6
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 2.5e-68 262.7 220 60.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 4.3e-68 261.9 219 61.2
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 9.7e-68 260.8 224 61.6
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.3e-67 260.4 219 61.2
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.3e-67 260.4 222 62.2
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.6e-67 260.0 219 60.7
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 3.7e-67 258.8 223 64.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 3.7e-67 258.8 225 60.9
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.8e-67 258.5 222 64.4
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 4.8e-67 258.5 224 61.6
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.3e-67 258.1 223 64.6
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 6.3e-67 258.1 224 61.2
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.1e-66 257.3 220 61.8
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.4e-66 256.9 227 59.5
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 4.1e-66 255.4 224 62.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.2e-65 253.8 224 60.7
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-65 253.1 223 59.2
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.0e-65 253.1 224 60.3
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 2.6e-65 252.7 220 62.7
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 7.7e-65 251.1 224 59.4
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.0e-64 250.8 233 57.5
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.7e-64 250.0 189 67.7
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 3.8e-64 248.8 212 64.2
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.8e-64 248.8 220 60.5
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-64 248.1 226 58.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-63 247.3 226 57.5
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 2.5e-63 246.1 220 60.9
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 3.2e-63 245.7 226 57.5
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.2e-63 245.4 220 60.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.5e-63 245.0 224 58.9
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 5.5e-63 245.0 257 56.0
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.1e-62 243.0 220 58.6
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 3.6e-62 242.3 220 61.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 4.6e-62 241.9 222 60.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 4.6e-62 241.9 231 55.8
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 6.1e-62 241.5 225 57.8
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.0e-61 240.7 215 59.5
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.1e-60 237.3 220 60.5
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.1e-60 237.3 223 57.0
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-60 236.9 199 63.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.5e-60 236.9 222 57.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.0e-60 236.5 220 60.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.0e-60 236.5 231 55.8
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.6e-60 236.1 228 56.6
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.4e-60 234.6 196 63.8
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 9.7e-60 234.2 220 58.2
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.7e-59 233.4 232 56.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.7e-59 232.3 266 51.9
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 4.8e-59 231.9 207 62.3
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.4e-58 230.3 207 58.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.3e-58 228.4 207 58.5
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.5e-57 225.3 209 57.4
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 7.7e-57 224.6 256 51.2
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-56 223.8 166 68.1
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 5.0e-56 221.9 185 65.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 5.0e-56 221.9 187 62.0
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.1e-55 220.7 224 56.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.9e-55 219.9 278 50.0
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.0e-53 212.6 223 54.7
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 7.4e-52 208.0 201 56.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.1e-50 204.1 205 59.0
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 4.1e-50 202.2 205 53.7
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 2.0e-49 199.9 255 47.1
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-48 196.1 154 68.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-48 194.9 350 37.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.1e-47 194.1 148 68.9
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.0e-45 185.7 148 64.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 6.7e-45 184.9 195 52.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.3e-43 180.6 139 71.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 8.2e-43 177.9 191 55.0
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.4e-42 176.4 169 57.4
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.2e-39 165.6 133 66.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.0e-37 161.0 133 63.9
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.0e-37 161.0 176 52.8
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.7e-36 155.2 144 59.7
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.4e-34 150.6 102 76.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.4e-34 148.7 125 65.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 5.4e-34 148.7 139 60.4
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 7.7e-33 144.8 113 69.9
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.0e-29 132.9 95 69.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 4.4e-28 129.0 184 43.5
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 5.4e-26 122.1 186 40.9
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.0e-25 120.2 127 52.0
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.3e-23 112.8 179 36.9
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 4.0e-21 105.9 186 35.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 5.2e-21 105.5 91 60.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 8.9e-21 104.8 151 45.7
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 5.7e-20 102.1 80 61.2
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.4e-19 98.6 62 67.7
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.5e-17 92.8 94 51.1
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.5e-15 87.4 111 43.2
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.8e-13 80.5 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 7.0e-10 68.6 132 37.1
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.0e-09 65.5 63 49.2
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 4.7e-06 55.8 165 29.7


User provided reference genes

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