Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1149.8 564 100.0
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1129.8 564 98.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1114.4 562 96.8
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1114.4 562 96.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1107.8 562 95.6
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1107.4 563 96.4
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1106.3 563 96.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1104.4 563 96.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 0.0e+00 1102.4 619 89.5
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1102.0 564 95.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1100.5 563 95.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 563 95.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1097.4 563 95.6
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 565 95.2
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 558 95.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 564 95.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 564 94.3
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 564 94.3
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 562 93.8
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 565 94.2
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 595 90.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 562 93.8
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 559 94.3
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 564 93.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 565 94.2
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 568 93.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 568 93.1
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 563 94.0
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 563 93.8
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 563 93.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 565 94.0
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 563 93.4
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 568 93.0
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 564 93.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 560 94.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 564 92.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 568 92.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 566 93.1
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 562 92.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 562 92.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 561 92.9
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 561 93.2
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 562 93.4
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 559 93.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 555 94.2
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 565 92.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 562 93.1
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 565 92.6
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 563 93.8
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 561 93.6
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 561 93.4
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.7
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 561 92.7
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 562 92.9
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 563 93.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 560 93.0
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 92.6
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 562 92.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 559 93.6
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 564 92.6
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 564 92.4
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 566 92.9
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 564 93.1
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 559 93.0
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 561 93.4
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 562 92.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 564 92.0
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 564 92.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 562 92.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 564 92.0
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 564 91.7
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 564 91.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.9e-310 1067.8 576 90.6
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 564 92.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 562 92.9
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 601 88.5
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.5e-309 1064.7 561 91.8
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 5.2e-307 1057.0 555 91.2
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 4.4e-306 1053.9 564 91.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 8.2e-305 1049.7 562 90.2
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 8.2e-305 1049.7 567 90.5
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.4e-304 1048.9 551 92.7
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 3.1e-304 1047.7 553 91.7
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.3e-302 1042.3 556 91.0
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.7e-302 1042.0 592 87.3
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.2e-301 1037.7 564 90.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 4.7e-300 1033.9 521 96.2
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 6.7e-299 1030.0 557 88.3
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 574 88.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-293 1012.7 562 86.8
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 548 88.0
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 548 88.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.0e-291 1006.1 563 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.3e-289 996.9 538 88.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.7e-286 988.8 521 91.9
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 7.3e-277 956.8 489 93.5
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.4e-275 952.6 496 93.5
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 4.4e-266 921.0 564 82.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.2e-264 914.8 454 96.3
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 5.0e-262 907.5 540 80.2
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 2.3e-246 855.5 539 77.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-239 832.8 562 75.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 8.1e-236 820.5 408 96.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.5e-234 814.7 564 75.4
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.4e-232 809.7 421 94.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.1e-231 805.8 530 78.7
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.0e-227 791.6 521 78.3
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 9.9e-226 786.9 521 77.9
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.5e-224 781.2 562 72.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.6e-221 770.4 504 75.6
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.8e-220 768.8 561 72.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.5e-218 761.5 562 72.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.5e-215 751.9 389 93.8
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.0e-209 731.5 553 67.8
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.5e-194 681.8 507 70.8
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 9.7e-189 664.1 329 96.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 6.5e-169 598.2 312 90.4
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.0e-158 564.3 511 61.4
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 9.2e-147 524.6 555 55.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-146 524.2 263 95.1
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-138 496.5 462 58.2
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.6e-135 486.1 258 94.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.8e-134 483.8 300 81.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.5e-128 464.2 293 79.5
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.5e-128 463.4 509 53.2
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-127 459.9 385 64.4
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 4.0e-126 456.1 567 49.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-122 444.1 499 50.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 4.6e-122 442.6 563 48.8
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.9e-121 439.5 237 94.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.5e-112 410.2 350 62.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.9e-110 402.1 196 96.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-99 368.2 246 76.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-97 360.5 269 69.1
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.4e-94 350.5 214 79.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.7e-92 344.4 167 98.2
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-92 344.0 305 63.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-91 341.7 183 86.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 5.3e-86 322.8 326 58.3
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-85 321.6 154 97.4
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.2e-83 312.4 160 91.2
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.0e-81 307.0 156 92.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 3.7e-79 300.1 176 89.2
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.6e-69 268.1 159 84.9
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.8e-65 252.3 158 81.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-54 216.5 123 88.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.0e-49 200.7 133 76.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 8.9e-49 199.1 105 91.4
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 6.6e-44 183.0 113 82.3
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.3e-43 180.3 277 43.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.8e-42 177.6 118 72.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 6.2e-34 149.8 98 79.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.6e-29 133.7 147 54.4
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-28 131.7 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 4.7e-26 123.6 73 87.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 9.9e-24 115.9 86 72.1
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 8.9e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.3e-15 89.0 88 62.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.2e-15 88.2 52 80.8
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 3.2e-14 84.3 59 69.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 4.2e-14 84.0 49 83.7
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 9.3e-14 82.8 44 84.1
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 2.5e-11 74.7 60 68.3
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 2.1e-10 71.6 48 75.0
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 3.8e-07 60.8 54 61.1


User provided reference genes

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