Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 8.8e-65 250.0 113 100.0
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 9.1e-62 240.0 113 94.7
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 9.1e-54 213.4 113 81.4
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 2.4e-46 188.7 113 72.6
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.7e-44 182.6 113 70.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.2e-44 182.2 113 70.8
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 6.5e-44 180.6 113 69.9
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.5e-43 179.5 113 69.0
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.9e-43 179.1 113 69.0
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.9e-43 179.1 113 69.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.2e-43 178.3 113 69.0
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.4e-43 176.8 113 68.1
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 8.0e-42 173.7 113 66.4
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.0e-42 173.7 113 67.3
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 66.4
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 66.4
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 66.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 1.8e-41 172.6 115 67.8
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 3.0e-41 171.8 113 63.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 8.8e-41 170.2 113 64.6
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.5e-40 169.5 113 65.5
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 4.4e-40 167.9 113 63.7
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 5.7e-40 167.5 113 65.5
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 9.8e-40 166.8 113 62.8
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.7e-39 164.9 113 61.1
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.7e-39 164.9 113 61.1
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.7e-39 164.9 113 61.1
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.7e-39 164.9 113 61.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.4e-38 162.2 113 61.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 9.1e-38 160.2 113 60.2
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 5.9e-37 157.5 113 61.9
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 7.7e-37 157.1 113 59.3
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 7.7e-37 157.1 111 61.3
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.0e-36 156.8 113 59.3
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.0e-36 156.8 113 59.3
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 3.8e-36 154.8 113 59.3
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 6.5e-36 154.1 111 59.5
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.1e-35 153.3 113 59.3
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 55.8
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-34 149.8 113 55.8
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-34 149.8 113 55.8
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 2.8e-34 148.7 111 56.8
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.6e-34 148.3 111 56.8
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 3.6e-34 148.3 113 59.3
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 3.6e-34 148.3 113 54.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.0e-33 146.7 113 57.5
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.8e-33 146.0 96 66.7
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.3e-33 145.6 113 53.1
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.3e-33 145.6 113 53.1
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 3.0e-33 145.2 113 56.6
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 5.2e-33 144.4 113 57.5
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 6.8e-33 144.1 111 56.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 2.0e-32 142.5 113 51.3
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 2.0e-32 142.5 113 58.4
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.4e-32 141.7 113 52.2
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 4.4e-32 141.4 113 56.6
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 9.8e-32 140.2 109 56.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.8e-31 138.7 98 60.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 2.8e-31 138.7 111 52.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.1e-30 136.7 113 54.9
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.1e-30 135.2 113 58.4
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 3.1e-30 135.2 113 54.9
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 4.1e-30 134.8 113 55.8
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 5.4e-30 134.4 113 58.4
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 2.0e-29 132.5 109 56.0
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.7e-29 132.1 103 52.4
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 2.7e-29 132.1 109 53.2
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 3.5e-29 131.7 114 54.4
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 4.5e-29 131.3 113 52.2
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 113 56.6
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.7e-28 129.4 113 57.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-28 129.4 109 53.2
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.7e-28 129.4 113 53.1
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 2.3e-28 129.0 113 52.2
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 2.9e-28 128.6 113 55.8
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 3.8e-28 128.3 113 50.4
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 3.8e-28 128.3 113 56.6
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 8.6e-28 127.1 113 54.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.1e-27 126.7 115 49.6
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.5e-27 126.3 113 55.8
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.9e-27 125.9 113 55.8
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.9e-27 125.9 111 51.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 4.3e-27 124.8 105 53.3
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 5.6e-27 124.4 113 50.4
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 4.7e-26 121.3 113 50.4
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 4.7e-26 121.3 113 53.1
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 6.1e-26 120.9 113 53.1
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 53.1
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 6.1e-26 120.9 116 45.7
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 8.0e-26 120.6 113 53.1
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 8.0e-26 120.6 113 52.2
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 1.4e-25 119.8 113 48.7
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 3.0e-25 118.6 113 52.2
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.0e-25 118.6 76 68.4
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 5.2e-25 117.9 113 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 5.7e-24 114.4 111 48.6
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.2e-23 112.5 113 44.2
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 3.7e-23 111.7 82 56.1
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.8e-22 109.4 140 43.6
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 3.2e-22 108.6 111 46.8
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.3e-20 103.2 87 47.1
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.3e-20 102.4 113 44.2
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.1e-19 100.1 109 41.3
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.3e-19 98.2 75 62.7
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 9.5e-19 97.1 71 60.6
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 1.6e-18 96.3 93 46.2
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.8e-18 95.5 111 41.4
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 3.6e-18 95.1 69 58.0
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 5.2e-17 91.3 74 52.7
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.2e-16 90.1 84 42.9
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 4.9e-15 84.7 62 64.5
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.1e-14 83.6 55 63.6
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 3.2e-14 82.0 113 40.7
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 4.6e-13 78.2 71 47.9
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 2.3e-12 75.9 72 51.4
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 3.6e-10 68.6 95 40.0
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 6.2e-10 67.8 83 39.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.6e-08 62.4 115 34.8
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.4e-08 61.6 114 32.5
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.2e-07 59.3 123 32.5
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 3.7e-07 58.5 115 32.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.3e-07 57.4 114 30.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.1e-06 57.0 115 32.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.1e-06 57.0 121 26.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.4e-06 56.6 114 31.6
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.2e-06 55.5 114 31.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.2e-06 55.5 114 29.8


User provided reference genes

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