Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1498.4 769 100.0
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1364.4 814 88.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1316.6 769 89.1
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1269.6 792 84.7
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1100.1 775 75.1
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.3e-308 1062.8 785 73.6
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.1e-303 1045.4 785 72.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 2.8e-303 1045.0 784 71.9
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 8.9e-302 1040.0 776 72.9
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 3.4e-301 1038.1 781 71.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 9.8e-301 1036.6 782 71.4
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.6e-298 1029.2 820 68.2
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 6.0e-298 1027.3 792 71.6
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 2.0e-293 1012.3 783 70.5
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 3.4e-293 1011.5 815 67.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 3.4e-293 1011.5 782 69.6
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.5e-290 1001.5 784 68.8
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 6.0e-290 1000.7 784 68.8
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.0e-289 1000.0 784 68.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.9e-289 998.0 843 65.8
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 4.3e-288 994.6 782 69.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.0e-285 985.7 784 69.1
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 4.9e-284 981.1 783 67.8
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.4e-283 979.5 781 69.3
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 4.1e-283 978.0 779 68.7
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 2.7e-282 975.3 785 67.4
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 7.8e-282 973.8 814 66.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.3e-276 956.4 808 64.1
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.2e-275 951.4 788 65.6
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.6e-274 949.5 865 61.7
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 6.0e-274 947.6 788 65.4
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 6.0e-274 947.6 864 61.1
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.7e-273 946.0 787 66.1
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 2.3e-273 945.7 784 66.5
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.6e-272 941.0 776 66.0
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 7.3e-272 940.6 784 66.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-271 939.5 789 65.7
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.1e-271 939.1 789 65.5
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.1e-271 939.1 786 65.6
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.8e-271 937.9 776 65.5
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.1e-270 936.8 800 64.5
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 6.9e-270 934.1 848 61.3
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 2.6e-269 932.2 797 65.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.8e-269 931.0 766 66.7
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 2.4e-267 925.6 783 65.9
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 4.2e-267 924.9 855 60.6
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 5.4e-267 924.5 780 65.5
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 5.6e-264 914.4 802 64.0
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 3.4e-261 905.2 772 64.8
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 3.9e-257 891.7 812 61.7
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 5.6e-256 887.9 866 58.1
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 5.6e-256 887.9 824 62.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.4e-256 887.5 790 63.4
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.3e-255 886.7 778 63.4
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.0e-252 877.1 792 63.8
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 8.4e-252 874.0 778 61.8
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 8.4e-252 874.0 744 63.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.1e-251 870.9 794 62.8
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.1e-250 869.4 777 61.9
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 8.7e-249 864.0 780 63.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 7.4e-248 860.9 779 61.5
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.3e-247 860.1 779 61.6
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.1e-246 857.1 776 62.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 2.4e-246 855.9 768 62.5
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 5.3e-246 854.7 713 67.2
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.2e-245 853.6 673 69.5
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 5.9e-245 851.3 755 62.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 7.6e-245 850.9 717 65.0
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 3.8e-244 848.6 770 60.4
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 8.5e-244 847.4 785 59.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 8.5e-244 847.4 782 61.6
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.1e-242 842.8 818 58.1
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.2e-239 832.8 783 58.0
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 4.8e-239 831.6 721 63.4
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.1e-238 830.5 764 59.8
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.1e-238 828.9 779 59.6
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 3.1e-238 828.9 770 59.5
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 5.3e-238 828.2 596 73.7
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 4.5e-237 825.1 807 57.5
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 5.0e-236 821.6 774 60.2
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 5.0e-236 821.6 774 60.2
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.4e-235 820.1 775 60.6
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 2.5e-235 819.3 809 59.1
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.6e-234 816.6 776 59.7
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 2.1e-234 816.2 775 61.2
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.1e-232 810.4 789 58.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.5e-232 810.1 770 58.6
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.7e-232 808.1 646 67.8
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.1e-227 793.9 774 58.5
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 3.9e-225 785.4 766 58.6
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.5e-224 783.5 835 55.6
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.6e-221 773.5 686 62.8
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 4.5e-221 771.9 785 58.1
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 4.5e-221 771.9 785 58.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.7e-220 770.0 806 57.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.9e-219 766.5 777 57.5
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 5.5e-219 765.0 777 57.4
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 4.7e-218 761.9 785 57.2
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 4.7e-218 761.9 785 57.2
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 4.0e-217 758.8 786 57.5
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 4.4e-216 755.4 774 56.8
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 8.2e-215 751.1 775 56.5
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 3.2e-211 739.2 778 56.2
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 3.7e-207 725.7 778 55.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 3.7e-207 725.7 778 55.3
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.7e-205 719.5 782 54.3
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 5.0e-204 715.3 796 53.6
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 9.2e-198 694.5 522 70.5
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 3.5e-197 692.6 745 54.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 3.6e-194 682.6 635 60.9
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.1e-190 671.0 775 51.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.4e-182 643.3 778 48.5
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 9.2e-182 641.3 779 48.8
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 3.7e-175 619.4 767 50.6
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.5e-171 607.4 711 53.2
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.5e-168 597.4 426 72.8
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.6e-160 570.1 802 45.4
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.4e-158 563.5 660 50.5
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.8e-154 549.3 366 76.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.5e-152 544.3 364 76.1
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.1e-147 528.1 631 52.8
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 8.1e-146 521.9 709 47.2
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.8e-144 515.8 787 44.0
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.5e-128 464.5 791 40.8
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.6e-120 437.2 728 41.2
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.3e-119 434.9 355 63.7
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.6e-117 427.9 356 65.7
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.4e-107 392.5 332 64.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 8.8e-92 342.4 472 46.2
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 7.2e-86 322.8 373 52.5
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.7e-71 275.0 356 47.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.9e-71 273.9 258 60.9
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.3e-70 269.6 256 57.4
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.2e-67 262.3 376 43.1
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 6.8e-60 236.5 302 44.7
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.1e-52 212.6 157 66.2
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.4e-51 207.6 157 70.1
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.3e-50 205.7 169 66.3
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.7e-47 195.3 301 43.9
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.7e-47 195.3 301 43.9
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.3e-47 194.9 132 72.7
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.9e-46 191.8 280 44.6
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.6e-45 187.6 113 83.2
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 9.0e-44 183.0 181 56.9
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 3.4e-43 181.0 623 28.4
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.2e-42 178.3 149 59.7
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.7e-40 171.4 276 37.3
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 1.0e-39 169.5 144 66.7
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 4.9e-34 150.6 134 60.4
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.5e-30 138.3 106 68.9
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.1e-28 132.9 75 88.0
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.1e-28 131.3 288 37.2
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 6.9e-28 130.2 75 86.7
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 5.8e-27 127.1 84 76.2
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.6e-19 101.7 85 57.6
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 3.0e-15 88.2 160 36.9
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.1e-14 86.3 50 82.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 3.3e-14 84.7 52 76.9
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 9.7e-14 83.2 74 56.8
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 9.7e-14 83.2 50 78.0
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 1.1e-12 79.7 72 58.3
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 6.5e-10 70.5 49 71.4
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.1e-09 69.7 76 56.6
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 2.5e-09 68.6 106 46.2
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 1.2e-08 66.2 59 59.3
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.1e-08 65.5 88 46.6
Sc06g0002980 Simmondsia chinensis HOM05D002494 ORTHO05D002673 3.0e-07 61.6 264 28.0
SGA_v2.0_scaffold232G43474 Striga asiatica HOM05D002494 ORTHO05D002673 3.9e-07 61.2 237 26.6
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 3.9e-07 61.2 242 26.4
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 8.8e-07 60.1 70 51.4
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 2.0e-06 58.9 280 26.1
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 2.5e-06 58.5 279 25.1
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 3.3e-06 58.2 280 25.4
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 3.3e-06 58.2 280 25.7
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 4.3e-06 57.8 242 26.9
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 4.3e-06 57.8 280 24.3
AUR62035526 Chenopodium quinoa HOM05D002494 ORTHO05D002673 5.7e-06 57.4 233 26.2
AUR62041649 Chenopodium quinoa HOM05D002494 ORTHO05D002673 5.7e-06 57.4 209 27.3
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 5.7e-06 57.4 280 26.1
Ca_24050_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 9.7e-06 56.6 298 26.2


User provided reference genes

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