Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.4e-235 818.5 431 100.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 7.7e-170 600.9 431 78.2
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 6.3e-87 325.5 394 50.8
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.7e-79 300.8 335 54.0
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 3.4e-77 293.1 338 54.1
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.7e-72 275.0 341 52.5
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 3.7e-71 273.1 362 49.4
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.8e-70 270.8 371 48.8
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 7.0e-70 268.9 394 46.7
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.1e-70 268.5 338 52.1
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 9.1e-70 268.5 364 49.5
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 2.6e-69 266.9 396 48.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 5.9e-69 265.8 390 47.7
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 4.2e-67 259.6 344 50.3
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 6.1e-66 255.8 411 45.3
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 2.6e-64 250.4 438 42.2
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 2.6e-64 250.4 356 46.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 1.3e-63 248.1 389 43.4
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.2e-63 247.3 410 43.2
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 3.7e-63 246.5 337 48.4
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.8e-62 244.2 370 45.1
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 4.1e-62 243.0 352 46.6
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.6e-61 241.1 428 43.5
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.6e-61 240.4 437 40.7
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 2.6e-61 240.4 335 46.9
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 3.5e-61 240.0 439 39.9
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 2.2e-60 237.3 326 46.3
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 2.2e-60 237.3 335 47.8
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 3.8e-60 236.5 364 45.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.8e-60 236.5 345 45.8
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 5.0e-60 236.1 427 42.2
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 6.5e-60 235.7 429 42.7
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 6.5e-60 235.7 366 45.6
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.5e-59 234.6 448 42.2
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.9e-59 234.2 401 41.4
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.9e-59 234.2 327 46.2
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 4.2e-59 233.0 350 43.4
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 5.5e-59 232.6 350 43.4
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.7e-58 230.3 391 44.0
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 8.8e-57 225.3 459 39.9
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.5e-56 224.6 338 45.9
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 2.6e-56 223.8 498 38.2
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 4.4e-56 223.0 360 43.1
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 5.7e-56 222.6 355 43.7
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 1.3e-55 221.5 444 38.1
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 2.8e-55 220.3 369 42.3
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.8e-55 219.5 455 40.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 6.3e-55 219.2 337 44.5
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.4e-54 218.0 430 39.5
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.4e-54 218.0 264 51.9
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.4e-54 218.0 368 42.4
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.8e-54 217.6 467 38.1
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.4e-54 217.2 460 38.9
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 3.1e-54 216.9 426 38.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 5.4e-54 216.1 368 44.0
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 5.4e-54 216.1 436 39.0
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.0e-53 214.2 341 45.5
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 2.0e-53 214.2 388 40.2
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 2.0e-53 214.2 326 44.5
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 3.5e-53 213.4 459 39.0
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 3.5e-53 213.4 393 40.7
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 3.5e-53 213.4 201 57.7
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 4.5e-53 213.0 473 38.3
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 5.9e-53 212.6 328 43.9
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 7.7e-53 212.2 365 42.2
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.3e-52 211.5 412 39.6
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.3e-52 211.5 368 39.9
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 3.8e-52 209.9 330 45.5
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 3.8e-52 209.9 330 45.5
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 3.8e-52 209.9 331 42.0
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 3.8e-52 209.9 406 38.4
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 8.5e-52 208.8 445 37.3
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 1.1e-51 208.4 328 42.1
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 9.4e-51 205.3 411 39.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.6e-50 203.4 333 43.5
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.0e-49 201.8 331 42.6
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.4e-49 201.4 435 37.7
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.0e-49 199.9 433 37.0
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 4.0e-49 199.9 435 37.5
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 8.8e-49 198.7 418 37.8
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.2e-48 198.4 429 36.8
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 2.6e-48 197.2 412 36.2
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 7.5e-48 195.7 422 37.4
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 9.8e-48 195.3 407 36.4
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.3e-47 194.9 407 36.4
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.2e-47 194.1 381 40.4
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.4e-46 191.4 400 37.2
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 3.8e-44 183.3 419 36.0
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 6.6e-44 182.6 420 36.0
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 8.6e-44 182.2 439 35.8
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 2.5e-43 180.6 330 38.8
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 3.3e-43 180.3 419 35.8
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 2.1e-42 177.6 264 44.3
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 2.8e-42 177.2 416 33.9
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 1.2e-37 161.8 295 41.7
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.0e-37 161.0 197 45.7
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.6e-37 159.8 261 44.1
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 7.8e-37 159.1 337 35.6
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 2.3e-36 157.5 262 40.5
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.3e-35 153.7 381 33.9
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.2e-32 145.2 184 44.0
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 3.2e-30 137.1 342 33.0
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 7.8e-29 132.5 228 41.7
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 3.9e-28 130.2 170 43.5
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 4.7e-26 123.2 188 41.0
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 8.1e-26 122.5 323 31.6
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.6e-24 117.5 188 36.7
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 9.8e-24 115.5 257 33.1
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 9.5e-19 99.0 70 65.7
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 2.1e-18 97.8 232 31.0
Sabra10G0067600 Salix brachista HOM05D006873 ORTHO05D008668 2.1e-13 81.3 119 44.5
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 3.5e-13 80.5 102 48.0
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.5e-11 75.1 50 70.0
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.8e-10 70.9 90 47.8
Sabra10G0067500 Salix brachista HOM05D006873 ORTHO05D008668 1.4e-09 68.6 79 55.7
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.4e-09 67.8 90 46.7
GSVIVG01020169001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.4e-06 58.5 87 43.7


User provided reference genes

Program Settings