Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G015350 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.0e-150 537.0 318 100.0
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.7e-89 333.6 313 68.1
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.1e-75 287.7 320 60.9
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 1.9e-72 276.9 305 63.9
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 3.2e-72 276.2 330 59.4
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 2.6e-50 203.4 303 54.1
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 5.9e-50 202.2 306 50.0
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.5e-48 197.6 302 49.0
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 4.7e-47 192.6 305 48.9
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 6.1e-47 192.2 296 52.4
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.0e-47 191.8 296 51.7
Gorai.012G022800 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.4e-46 191.0 298 48.7
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 5.2e-46 189.1 313 53.4
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 1.5e-45 187.6 300 50.0
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 7.5e-45 185.3 303 46.5
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 6.3e-44 182.2 288 47.6
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 3.1e-43 179.9 301 46.5
Atru.chr12.1090 Acer truncatum HOM05D003044 ORTHO05D001869 1.7e-41 174.1 311 46.9
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 4.2e-40 169.5 327 48.3
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 8.0e-39 165.2 320 49.4
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 8.8e-38 161.8 316 50.3
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 1.5e-37 161.0 321 43.6
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.7e-36 157.5 305 49.2
Glyma.10G194700 Glycine max HOM05D003044 ORTHO05D001869 6.3e-36 155.6 331 43.8
Gohir.D04G019080 Gossypium hirsutum HOM05D003044 ORTHO05D001869 9.1e-35 151.8 266 47.0
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 1.2e-34 151.4 298 48.0
ClCG08G008450 Citrullus lanatus HOM05D003044 ORTHO05D001869 3.8e-33 146.4 315 46.0
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 6.6e-33 145.6 322 47.2
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 1.5e-32 144.4 289 43.9
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 5.5e-32 142.5 303 49.2
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 7.2e-32 142.1 335 45.7
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 2.1e-31 140.6 321 48.9
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 8.0e-31 138.7 310 45.8
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 5.2e-30 136.0 310 45.2
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 1.5e-29 134.4 376 38.8
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 1.5e-29 134.4 376 38.8
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 2.6e-29 133.7 344 43.6
Phvul.007G136500 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 3.4e-29 133.3 312 48.7
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 5.7e-29 132.5 314 48.7
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 1.3e-28 131.3 340 41.2
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 1.7e-28 131.0 355 42.8
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.2e-28 130.6 321 42.4
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 2.8e-28 130.2 337 40.1
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 3.7e-28 129.8 322 41.9
Dinv04420 Davidia involucrata HOM05D003044 ORTHO05D001869 8.3e-28 128.6 321 45.8
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 1.8e-27 127.5 235 44.3
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 3.1e-27 126.7 369 37.4
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 9.2e-27 125.2 325 40.0
Oeu015285.1 Olea europaea HOM05D003044 ORTHO05D001869 1.6e-26 124.4 211 43.1
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 2.0e-26 124.0 332 41.3
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 2.0e-26 124.0 326 40.5
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 2.7e-26 123.6 356 39.9
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 1.0e-25 121.7 309 42.4
Lj3A920T29 Lonicera japonica HOM05D003044 ORTHO05D001869 2.3e-25 120.6 328 39.6
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 3.9e-25 119.8 339 37.8
MSTRG.27548 Avicennia marina HOM05D003044 ORTHO05D001869 1.1e-24 118.2 214 44.9
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 9.5e-24 115.2 145 51.0
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 2.1e-23 114.0 296 39.9
Aqoxy2G00627 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 2.8e-23 113.6 328 36.3
vmacro10333 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 6.1e-23 112.5 305 38.7
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 8.0e-23 112.1 393 35.6
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.0e-22 111.7 306 37.9
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.0e-22 111.7 135 54.1
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 1.0e-22 111.7 328 42.1
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 1.4e-22 111.3 325 36.6
CSS0031943 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 1.8e-22 110.9 327 40.7
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 6.8e-22 109.0 318 39.0
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 2.6e-21 107.1 328 38.1
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 4.4e-21 106.3 326 38.0
A03p36670 Brassica napus HOM05D003044 ORTHO05D001869 1.7e-20 104.4 331 36.9
BraA03t12831Z Brassica rapa HOM05D003044 ORTHO05D001869 1.7e-20 104.4 331 36.9
C03p44310 Brassica napus HOM05D003044 ORTHO05D001869 2.2e-20 104.0 331 38.1
Aa31LG3G3500 Aethionema arabicum HOM05D003044 ORTHO05D001869 6.4e-20 102.4 322 43.5
Hma1.2p1_0153F.1_g067850 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 8.3e-20 102.1 353 39.4
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 1.1e-19 101.7 212 42.9
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 1.9e-19 100.9 378 38.1
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 3.2e-19 100.1 223 41.7
Rhsim03G0094000 Rhododendron simsii HOM05D003044 ORTHO05D001869 3.2e-19 100.1 318 38.7
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 4.1e-19 99.8 134 52.2
Psat4g227200 Pisum sativum HOM05D003044 ORTHO05D001869 5.4e-19 99.4 108 59.3
arahy.Tifrunner.gnm1.ann1.Y6HWEI Arachis hypogaea HOM05D003044 ORTHO05D001869 9.2e-19 98.6 250 38.4
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 1.2e-18 98.2 250 38.4
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 7.8e-18 95.5 142 48.6
Gohir.D04G019020 Gossypium hirsutum HOM05D003044 ORTHO05D001869 7.8e-18 95.5 103 54.4
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.0e-17 95.1 347 38.3
Thhalv10019905m.g Eutrema salsugineum HOM05D003044 ORTHO05D001869 1.0e-17 95.1 354 40.4
Gohir.D04G019060 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.0e-17 95.1 108 51.9
Gorai.012G022700 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.0e-17 95.1 108 51.9
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 6.6e-17 92.4 146 48.6
CAN.G765.14 Capsicum annuum HOM05D003044 ORTHO05D001869 1.5e-16 91.3 207 39.6
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 1.9e-16 90.9 265 44.5
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 3.3e-16 90.1 136 48.5
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 5.6e-16 89.4 369 36.3
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 5.6e-16 89.4 141 48.2
PGSC0003DMG400023499 Solanum tuberosum HOM05D003044 ORTHO05D001869 5.6e-16 89.4 223 41.3
BolC1t05369H Brassica oleracea HOM05D003044 ORTHO05D001869 7.3e-16 89.0 305 37.7
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 9.5e-16 88.6 349 37.0
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 9.5e-16 88.6 338 34.6
BraA01t04231Z Brassica rapa HOM05D003044 ORTHO05D001869 1.2e-15 88.2 282 35.5
Hma1.2p1_0098F.1_g048290 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.6e-15 87.8 269 36.1
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.6e-15 87.8 309 40.1
Aqoxy1G00609 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 2.1e-15 87.4 343 34.7
CAN.G1433.1 Capsicum annuum HOM05D003044 ORTHO05D001869 2.8e-15 87.0 208 41.3
Actinidia31115 Actinidia chinensis HOM05D003044 ORTHO05D001869 3.6e-15 86.7 328 39.3
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 3.6e-15 86.7 322 39.8
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 2.3e-14 84.0 325 41.2
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 4.0e-14 83.2 338 39.9
Eucgr.J00304 Eucalyptus grandis HOM05D003044 ORTHO05D001869 4.0e-14 83.2 303 39.9
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 4.0e-14 83.2 261 38.3
SalBow6G6809 Salvia bowleyana HOM05D003044 ORTHO05D001869 5.2e-14 82.8 289 33.6
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 6.8e-14 82.4 353 37.1
Actinidia34738 Actinidia chinensis HOM05D003044 ORTHO05D001869 1.2e-13 81.6 329 35.9
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 1.5e-13 81.3 328 36.3
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 1.5e-13 81.3 311 37.3
SHI21256 Sapria himalayana HOM05D003044 ORTHO05D001869 2.0e-13 80.9 114 51.8
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 2.0e-13 80.9 328 38.1
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 4.4e-13 79.7 317 31.9
vmacro07277 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 5.8e-13 79.3 287 34.8
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 7.5e-13 79.0 338 36.7
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 2.2e-12 77.4 351 31.9
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 4.9e-12 76.3 241 37.3
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 6.4e-12 75.9 328 33.5
Sed0010208 Sechium edule HOM05D003044 ORTHO05D001869 6.4e-12 75.9 126 46.0
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 1.9e-11 74.3 261 36.4
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 2.4e-11 73.9 380 29.7
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.2e-11 73.6 141 40.4
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 4.1e-11 73.2 277 33.9
vmacro22754 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 4.1e-11 73.2 157 41.4
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 5.4e-11 72.8 358 31.3
Zm00001eb060090 Zea mays HOM05D003044 ORTHO05D001869 5.4e-11 72.8 153 41.8
Hma1.2p1_0153F.1_g067840 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 9.2e-11 72.0 287 40.4
Os03g0788300 Oryza sativa ssp. japonica HOM05D003044 ORTHO05D001869 1.2e-10 71.6 148 41.2
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 2.1e-10 70.9 163 37.4
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 3.5e-10 70.1 353 32.9
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 6.0e-10 69.3 413 33.4
HanXRQChr11g0322921 Helianthus annuus HOM05D003044 ORTHO05D001869 1.3e-09 68.2 204 37.7
HPP92_018630 Vanilla planifolia HOM05D003044 ORTHO05D001869 2.3e-09 67.4 183 45.4
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 3.0e-09 67.0 267 36.0
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 3.0e-09 67.0 225 33.8
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 3.9e-09 66.6 320 40.0
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 5.1e-09 66.2 154 39.0
unitig_46.g18649 Utricularia gibba HOM05D003044 ORTHO05D001869 5.1e-09 66.2 277 40.4
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 6.6e-09 65.9 235 34.5
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.5e-08 64.7 151 39.1
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.9e-08 64.3 254 32.3
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 1.9e-08 64.3 332 31.0
Solyc05g055130.1 Solanum lycopersicum HOM05D003044 ORTHO05D001869 2.5e-08 63.9 110 47.3
HanXRQChr07g0201481 Helianthus annuus HOM05D003044 ORTHO05D001869 3.3e-08 63.5 247 36.0
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 7.3e-08 62.4 331 32.3
Lsat_1_v5_gn_9_94741 Lactuca sativa HOM05D003044 ORTHO05D001869 9.5e-08 62.0 62 61.3
TPR.G19790 Trifolium pratense HOM05D003044 ORTHO05D001869 1.2e-07 61.6 230 42.2
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 2.1e-07 60.8 317 38.2
RcHm_v2.0_Chr1g0366041 Rosa chinensis HOM05D000292 ORTHO05D000172 2.8e-07 60.5 110 44.5
Oeu020482.1 Olea europaea HOM05D003044 ORTHO05D001869 4.7e-07 59.7 314 30.9
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 6.2e-07 59.3 321 29.3
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 8.1e-07 58.9 193 35.8
Lsat_1_v5_gn_6_70241 Lactuca sativa HOM05D003044 ORTHO05D001869 3.1e-06 57.0 62 58.1
HPP92_019542 Vanilla planifolia HOM05D003044 ORTHO05D001869 3.1e-06 57.0 132 37.1
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.8e-06 55.8 259 35.1


User provided reference genes

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