Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 8.4e-235 816.6 406 100.0
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.0e-227 793.1 406 96.3
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.0e-227 790.8 406 95.6
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 8.5e-227 790.0 406 95.1
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.8e-213 745.7 408 91.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 2.0e-212 742.3 407 89.9
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.7e-211 739.2 408 90.7
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.9e-211 738.4 409 89.5
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 3.8e-211 738.0 405 89.6
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 7.2e-210 733.8 408 90.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.6e-209 732.6 406 89.4
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.6e-209 732.6 408 89.7
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.3e-208 728.8 409 89.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.3e-208 728.8 407 89.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 6.7e-208 727.2 410 89.0
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 6.7e-208 727.2 403 88.8
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.5e-207 726.1 410 89.0
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.6e-207 725.3 411 89.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 7.4e-207 723.8 404 88.9
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.7e-206 722.6 409 89.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.2e-206 722.2 409 89.0
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 2.4e-205 718.8 407 88.2
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.4e-205 718.8 413 88.4
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-205 718.8 407 87.2
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.1e-205 718.4 406 88.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 7.0e-205 717.2 418 86.1
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.0e-205 717.2 407 90.2
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.6e-204 715.3 423 86.1
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.3e-203 713.0 409 87.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.7e-203 712.6 406 87.7
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.2e-203 712.2 407 87.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.2e-203 712.2 406 87.2
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.8e-203 711.4 407 88.0
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.5e-203 710.7 407 86.0
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 8.5e-203 710.3 405 88.4
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.5e-202 709.5 408 86.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.5e-202 708.8 408 87.7
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 3.2e-202 708.4 405 88.1
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.2e-202 708.4 405 88.4
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 9.4e-202 706.8 406 86.9
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.2e-201 706.4 405 88.1
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 2.7e-201 705.3 410 86.1
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 3.6e-201 704.9 405 86.7
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.6e-201 704.9 406 86.7
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.7e-201 704.5 405 87.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.7e-201 704.5 407 85.7
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.0e-200 703.4 406 86.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.4e-200 703.0 409 86.3
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.4e-200 703.0 409 86.8
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.8e-200 702.6 405 87.7
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.2e-199 699.9 409 85.8
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.5e-199 699.5 409 86.1
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.5e-199 699.5 409 86.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.0e-199 699.1 411 85.9
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.0e-199 699.1 407 85.0
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 2.0e-199 699.1 411 85.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 9.7e-199 696.8 422 83.6
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 3.7e-198 694.9 411 84.9
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 3.7e-198 694.9 411 84.9
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 4.8e-198 694.5 411 84.9
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 4.8e-198 694.5 408 85.0
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.3e-198 694.1 411 84.7
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 6.3e-198 694.1 418 84.2
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 8.2e-198 693.7 411 85.2
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 8.2e-198 693.7 411 85.2
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 8.2e-198 693.7 407 86.2
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.2e-198 693.7 407 86.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-197 692.6 411 84.9
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.8e-197 692.6 411 84.4
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.8e-197 692.6 407 83.5
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 5.3e-197 691.0 411 84.9
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 9.1e-197 690.3 411 84.9
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.0e-196 689.1 371 90.8
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 2.7e-196 688.7 418 83.7
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.5e-196 688.3 408 85.3
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.5e-196 688.0 406 86.2
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.0e-195 686.8 411 84.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.0e-195 686.8 410 85.6
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.7e-195 686.0 408 85.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.7e-195 686.0 408 85.3
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 2.9e-195 685.3 406 85.0
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 8.5e-195 683.7 406 84.7
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.1e-194 683.3 406 84.0
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.5e-194 682.9 408 83.3
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.5e-194 682.2 408 84.6
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.5e-194 682.2 406 84.5
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.2e-194 681.8 406 84.0
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.2e-194 681.4 415 83.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 7.2e-194 680.6 411 83.2
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.6e-193 679.5 407 84.3
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 8.0e-193 677.2 424 82.8
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.4e-192 676.4 405 84.4
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.3e-192 675.6 422 81.5
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.3e-192 675.6 378 88.1
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 6.8e-192 674.1 407 82.6
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 6.8e-192 674.1 375 88.5
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.2e-191 673.3 427 81.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.4e-191 671.4 416 82.0
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.7e-191 671.0 409 82.6
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-190 669.8 385 87.8
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.2e-190 669.1 377 87.5
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.8e-190 668.7 413 81.8
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.4e-189 665.6 357 89.6
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 9.1e-189 663.7 411 81.5
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 3.5e-188 661.8 376 87.0
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 8.6e-187 657.1 409 80.9
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.0e-179 633.6 333 92.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 8.0e-177 624.0 376 83.0
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.8e-176 620.9 411 78.1
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 2.0e-175 619.4 409 78.7
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.2e-174 615.9 370 80.5
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.2e-174 615.9 357 82.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.4e-174 614.4 402 73.9
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.5e-172 608.6 360 80.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 7.8e-164 580.9 340 85.0
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 3.3e-162 575.5 401 74.3
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 9.2e-157 557.4 338 84.0
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 3.3e-154 548.9 324 86.1
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.1e-152 543.9 319 85.6
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.3e-150 537.0 357 72.5
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.5e-146 523.5 406 69.7
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-146 522.3 380 66.6
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.9e-144 514.6 309 83.8
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 2.4e-141 506.1 290 87.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.2e-141 505.4 284 85.2
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.5e-138 496.1 301 84.4
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 2.4e-136 489.6 349 68.8
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.0e-136 488.8 386 64.0
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 4.8e-129 465.3 372 61.8
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.6e-127 459.5 248 89.9
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 8.4e-118 427.9 285 76.1
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.1e-116 423.3 282 75.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 6.9e-104 381.7 320 65.0
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.3e-102 377.5 290 65.2
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.8e-60 236.9 132 87.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.6e-60 236.5 132 86.4
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 3.9e-54 216.5 370 37.0
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.2e-49 200.7 118 80.5
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.9e-49 200.3 118 79.7
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.1e-44 184.1 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-43 181.4 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.4e-43 181.4 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 5.1e-38 162.9 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.1e-35 155.2 106 74.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.4e-34 150.2 100 79.0
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.4e-32 144.1 94 76.6
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.6e-28 131.3 105 69.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.6e-26 124.0 148 51.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-23 115.2 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.3e-22 110.9 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.3e-21 106.7 81 69.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-19 100.9 47 91.5
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 5.3e-19 99.8 62 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.0e-19 99.0 59 83.1
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 3.0e-14 84.0 80 63.8
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 1.0e-06 58.9 53 58.5


User provided reference genes

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