Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 2.5e-141 505.4 241 100.0
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 2.2e-126 455.7 241 90.9
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.0e-107 392.1 241 75.9
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 5.6e-101 371.3 231 72.7
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.8e-100 369.0 230 73.5
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 4.7e-100 368.2 231 72.3
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 6.2e-100 367.9 230 73.5
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 6.8e-99 364.4 233 72.1
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 8.9e-99 364.0 230 72.2
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 8.9e-99 364.0 232 71.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 2.9e-97 359.0 233 71.7
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 4.9e-97 358.2 218 76.1
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 4.9e-97 358.2 226 71.7
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 4.9e-97 358.2 220 73.2
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 6.4e-97 357.8 223 73.5
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 8.3e-97 357.5 223 72.6
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 1.1e-96 357.1 232 72.8
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.1e-96 357.1 233 70.0
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 5.4e-96 354.8 231 72.3
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 7.0e-96 354.4 229 71.6
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.6e-95 353.2 217 74.7
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 2.0e-95 352.8 231 70.1
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.7e-95 352.4 230 70.0
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 2.7e-95 352.4 220 71.4
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 7.8e-95 350.9 234 70.1
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.3e-94 350.1 234 70.5
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.3e-94 350.1 235 68.9
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 1.7e-94 349.7 219 73.5
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.7e-94 349.7 222 73.0
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 1.7e-94 349.7 228 71.5
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 3.9e-94 348.6 218 73.4
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 3.9e-94 348.6 221 73.3
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 3.9e-94 348.6 221 73.3
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 3.9e-94 348.6 221 73.3
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 3.9e-94 348.6 221 73.3
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.5e-93 346.7 222 73.4
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.9e-93 346.3 229 71.2
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 5.6e-93 344.7 224 71.0
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.2e-92 343.6 229 69.4
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 1.2e-92 343.6 220 71.8
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 2.8e-92 342.4 230 70.0
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 4.7e-92 341.7 228 70.6
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 6.2e-92 341.3 235 68.5
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 1.5e-90 336.7 234 66.7
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.5e-90 336.7 248 63.7
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.5e-90 336.7 248 63.7
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 2.0e-90 336.3 235 66.4
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 9.8e-90 334.0 234 66.2
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.7e-89 333.2 234 65.0
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.7e-89 333.2 202 74.3
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 3.7e-89 332.0 214 70.1
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.7e-89 332.0 233 66.1
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 4.9e-89 331.6 219 69.4
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 6.4e-89 331.3 224 67.0
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.9e-88 329.7 229 68.1
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 2.4e-88 329.3 230 67.8
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 3.2e-88 328.9 240 64.6
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.2e-88 328.9 223 68.6
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.1e-88 328.6 228 68.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 4.1e-88 328.6 228 68.9
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 7.1e-88 327.8 229 65.9
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.2e-87 327.0 207 71.0
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.1e-87 326.2 231 64.5
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 3.5e-87 325.5 204 71.1
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 6.0e-87 324.7 218 70.6
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 6.0e-87 324.7 228 66.7
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.0e-86 323.9 237 65.0
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.3e-86 323.6 219 68.0
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 3.9e-86 322.0 227 65.6
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 3.9e-86 322.0 238 65.1
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 5.1e-86 321.6 220 69.1
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.9e-85 319.7 223 69.1
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 3.3e-85 318.9 220 65.9
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 5.6e-85 318.2 218 65.6
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.6e-84 315.5 204 70.1
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 1.8e-83 313.2 217 65.9
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 3.1e-83 312.4 241 62.2
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 5.2e-83 311.6 231 64.5
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.2e-82 310.5 220 65.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 2.6e-82 309.3 222 64.0
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 5.8e-82 308.1 240 62.1
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.4e-80 303.5 227 64.3
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 7.8e-79 297.7 228 63.6
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 8.6e-78 294.3 207 68.1
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 2.8e-76 289.3 190 66.3
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 4.2e-72 275.4 168 76.2
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.0e-70 269.2 155 74.8
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.5e-69 266.2 168 75.0
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 3.3e-69 265.8 170 74.1
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 5.6e-69 265.0 150 78.0
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 4.8e-68 261.9 224 58.9
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 5.3e-67 258.5 168 69.0
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 6.9e-67 258.1 180 66.1
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.5e-61 239.6 157 66.2
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.6e-60 236.9 166 68.7
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 2.8e-60 236.1 158 69.0
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.3e-59 231.9 169 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 4.0e-51 205.7 306 36.3
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 1.2e-50 204.1 163 62.6
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 1.6e-44 183.7 226 44.7
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.4e-43 180.6 264 38.3
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 1.2e-42 177.6 114 74.6
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 7.7e-34 148.3 103 61.2
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 8.5e-33 144.8 188 41.0
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 4.2e-32 142.5 165 40.0
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 9.4e-32 141.4 111 66.7
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.2e-31 141.0 104 60.6
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 4.1e-19 99.4 67 74.6
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 1.3e-17 94.4 60 78.3
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.9e-17 93.2 51 74.5
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 6.1e-15 85.5 96 49.0
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.4e-14 84.3 144 36.1
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 1.8e-14 84.0 170 31.2
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 4.8e-12 75.9 68 54.4
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.8e-11 73.9 60 53.3
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 3.1e-11 73.2 52 59.6
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.2e-10 71.2 168 32.7
PRCOL_00000148 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.7e-09 67.4 190 26.3
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 2.1e-07 60.5 127 36.2
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 4.7e-07 59.3 183 27.9


User provided reference genes

Program Settings