Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.0e-165 586.6 291 100.0
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 7.1e-159 563.9 291 95.9
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.3e-157 559.7 312 90.4
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.1e-155 550.4 291 91.4
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 3.1e-154 548.5 291 90.7
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 4.0e-154 548.1 291 92.1
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.4e-153 544.7 291 91.1
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.4e-153 544.7 291 91.1
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 7.6e-153 543.9 291 90.0
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.3e-152 543.1 291 90.7
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 8.4e-152 540.4 291 90.0
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-151 540.0 291 89.3
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.4e-151 539.7 291 90.7
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.9e-151 539.3 291 89.7
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 90.7
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 3.2e-151 538.5 291 89.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.2e-151 538.1 291 89.0
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 5.4e-151 537.7 291 90.0
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 9.2e-151 537.0 290 89.3
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.6e-150 536.2 291 90.7
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.1e-150 535.8 288 89.2
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.7e-150 535.4 290 89.0
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 88.7
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 89.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 89.7
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 4.6e-150 534.6 289 90.0
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.0e-149 533.5 288 89.2
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.0e-149 533.5 291 90.0
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.3e-149 533.1 291 88.7
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.7e-149 532.7 288 89.9
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.7e-149 532.7 291 88.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.7e-149 532.7 291 88.0
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.3e-149 532.3 288 89.6
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.0e-149 531.9 288 89.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 3.0e-149 531.9 288 90.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.9e-149 531.6 291 88.0
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 87.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 88.3
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 88.3
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.5e-148 529.6 292 89.0
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.5e-148 529.6 291 87.3
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.9e-148 529.3 291 87.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.3e-148 528.5 288 88.5
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.3e-148 528.5 291 87.6
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.3e-148 528.1 288 88.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 87.3
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 87.3
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 9.6e-148 526.9 288 89.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 86.6
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.8e-147 525.4 289 87.9
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 3.6e-147 525.0 293 85.7
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-147 524.6 298 84.9
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 87.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 86.6
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.4e-146 523.1 289 86.5
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.8e-146 522.7 290 87.2
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.6
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.8e-146 522.7 289 87.2
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.1e-146 521.9 288 87.2
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.1e-146 521.9 288 87.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 3.1e-146 521.9 291 86.9
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 3.1e-146 521.9 273 93.4
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.1e-146 521.9 288 88.2
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 5.2e-146 521.2 296 86.1
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 6.9e-146 520.8 288 88.2
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.2e-145 520.0 280 90.0
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 85.6
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 2.0e-145 519.2 291 85.6
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.6e-145 518.8 291 85.9
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 3.4e-145 518.5 290 86.2
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 3.4e-145 518.5 288 86.1
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 85.2
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 84.9
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.3e-144 516.5 287 87.1
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.7e-144 516.2 292 86.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.9e-144 515.4 288 85.4
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.9e-144 515.4 291 85.6
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.9e-144 515.4 291 85.6
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 85.9
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 85.5
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 4.9e-144 514.6 288 86.8
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 8.4e-144 513.8 295 85.1
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.4e-143 513.1 292 84.9
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 2.4e-143 512.3 292 84.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 2.4e-143 512.3 291 83.8
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.2e-143 511.9 319 79.0
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 4.2e-143 511.5 288 86.1
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 4.2e-143 511.5 288 86.1
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 9.3e-143 510.4 272 91.9
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 9.3e-143 510.4 290 84.8
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.6e-142 509.6 290 86.2
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 7.8e-142 507.3 272 90.8
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.0e-141 506.9 291 85.2
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.0e-141 506.9 272 90.4
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 2.3e-141 505.8 291 84.9
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.0e-141 505.4 291 84.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.9e-141 505.0 272 90.1
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 5.1e-141 504.6 291 84.5
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-140 503.4 274 88.7
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.9e-140 502.7 273 90.1
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.5e-140 502.3 296 83.4
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 3.3e-140 501.9 272 89.7
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 3.3e-140 501.9 275 86.9
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.8e-139 498.8 290 84.5
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.8e-139 498.8 286 84.6
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-138 496.9 273 87.2
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.0e-137 492.7 280 86.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.0e-137 492.7 289 83.7
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.6e-137 492.3 273 87.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 7.6e-137 490.7 363 69.4
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.2e-136 489.2 293 83.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 7.1e-135 484.2 272 87.5
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.2e-134 483.4 292 81.2
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.7e-134 482.3 295 82.4
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.7e-134 482.3 295 82.4
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.5e-134 481.9 259 89.6
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.8e-133 479.6 312 77.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 3.0e-133 478.8 272 86.4
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 6.7e-133 477.6 255 90.6
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.7e-133 477.6 300 78.7
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.5e-132 476.5 268 87.3
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.0e-129 466.1 253 88.1
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 5.8e-129 464.5 253 87.7
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 2.5e-127 459.1 286 76.9
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.1e-126 456.1 238 92.9
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 3.5e-126 455.3 291 78.0
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 7.9e-126 454.1 271 78.6
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.9e-125 451.8 315 74.0
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 6.7e-125 451.1 247 87.9
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 8.7e-125 450.7 288 78.1
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.6e-123 446.4 324 70.1
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.8e-123 445.7 238 89.5
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 8.2e-123 444.1 283 73.1
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 4.5e-121 438.3 242 88.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 6.0e-118 427.9 290 75.2
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.6e-113 412.5 275 76.7
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.0e-112 410.6 220 90.5
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 8.5e-112 407.5 391 58.3
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 2.1e-110 402.9 290 67.6
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 2.6e-100 369.4 192 89.1
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-96 357.5 273 68.1
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 8.5e-96 354.4 198 86.4
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.3e-91 340.5 173 93.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 5.9e-89 331.6 271 64.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.0e-88 330.9 288 63.5
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.0e-85 319.3 278 61.9
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 3.2e-79 299.3 234 67.5
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-77 292.4 172 79.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-69 266.9 194 71.1
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 9.8e-68 261.2 261 48.7
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-52 211.1 193 61.1
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-52 209.1 131 79.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-52 209.1 131 79.4
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 4.0e-37 159.5 141 61.7
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.3e-31 139.8 129 61.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 8.7e-24 115.2 100 60.0
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.9e-23 114.0 72 68.1
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 5.6e-23 112.5 91 61.5
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 6.2e-22 109.0 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.2e-22 109.0 88 64.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.2e-19 100.5 65 73.8
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.1e-15 88.2 51 76.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-14 84.7 46 87.0
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 4.0e-13 79.7 45 82.2
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.0e-11 75.1 90 53.3
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.0e-11 75.1 90 53.3
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-08 64.7 45 64.4
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.8e-08 64.3 39 82.1
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 4.8e-06 56.2 32 81.2


User provided reference genes

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