Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 7.4e-209 730.3 377 100.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.2e-196 688.0 377 93.6
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.0e-189 666.8 441 81.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.1e-183 646.7 455 76.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.1e-167 593.6 372 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 5.4e-167 591.3 380 82.4
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.0e-166 589.3 377 81.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.0e-165 587.0 377 81.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 6.5e-165 584.3 377 82.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.0e-162 577.0 364 80.5
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 6.8e-162 574.3 381 79.8
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.2e-161 573.5 358 82.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.0e-161 572.8 358 82.1
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.4e-161 572.0 381 79.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.4e-161 572.0 348 84.5
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.7e-161 571.2 358 82.1
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.5e-161 570.9 353 83.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 7.5e-161 570.9 364 80.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 9.8e-161 570.5 378 80.4
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.3e-160 570.1 395 77.7
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.3e-160 570.1 347 83.6
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 2.8e-160 568.9 367 79.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.1e-159 567.0 342 84.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.4e-159 565.8 382 79.6
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-159 565.1 341 84.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.1e-159 565.1 370 80.8
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.4e-159 564.7 378 79.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 7.0e-159 564.3 352 82.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 7.0e-159 564.3 358 81.8
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 9.2e-159 563.9 363 79.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.2e-158 563.5 357 80.7
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.6e-158 563.1 347 82.4
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.5e-158 562.0 378 79.6
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.5e-158 561.6 325 85.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.3e-157 560.1 359 81.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.7e-157 559.7 355 81.1
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.9e-157 558.9 358 80.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.1e-156 557.0 374 79.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.1e-156 557.0 376 78.2
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.9e-156 556.2 368 77.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.5e-156 555.8 391 76.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.5e-156 555.8 354 82.2
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.6e-156 554.7 343 83.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 9.5e-156 553.9 332 83.7
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.1e-155 552.7 349 81.9
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.6e-155 552.0 349 81.7
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.1e-155 551.2 354 80.2
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 8.0e-155 550.8 353 80.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 8.0e-155 550.8 324 86.1
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-154 550.1 376 77.7
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.8e-154 549.7 334 82.0
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.0e-154 548.9 354 80.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 4.0e-154 548.5 326 83.7
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 4.0e-154 548.5 324 85.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.0e-154 548.5 357 79.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 5.2e-154 548.1 352 80.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 6.8e-154 547.7 334 83.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.8e-154 547.7 360 78.6
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 8.9e-154 547.4 353 80.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.5e-153 546.6 335 81.8
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 3.4e-153 545.4 332 82.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-153 545.4 333 83.2
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.4e-153 545.0 378 76.5
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.4e-153 545.0 348 80.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-152 543.5 360 77.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-152 543.5 337 82.5
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.3e-152 543.5 352 79.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-152 543.5 328 82.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-152 543.5 328 82.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.7e-152 543.1 327 83.8
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.2e-152 542.7 378 76.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.2e-152 542.7 378 76.7
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.2e-152 542.7 352 80.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.2e-152 542.7 346 80.1
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.9e-152 542.3 353 80.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.9e-152 542.3 352 79.0
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 347 79.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 3.7e-152 542.0 323 84.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 3.7e-152 542.0 377 75.9
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.9e-152 541.6 350 78.9
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 8.3e-152 540.8 369 77.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.1e-151 540.4 378 75.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.4e-151 539.3 368 76.1
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-151 539.3 376 76.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.4e-151 539.3 376 75.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 3.2e-151 538.9 368 76.9
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.2e-151 538.9 358 78.5
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-151 538.9 349 79.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 3.2e-151 538.9 369 77.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-151 538.5 376 75.5
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.2e-150 537.0 364 77.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.6e-150 536.6 368 75.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.7e-150 535.8 368 75.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.7e-150 535.8 341 80.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.5e-150 535.4 378 75.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.5e-150 535.4 375 75.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-150 535.4 375 75.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 5.9e-150 534.6 368 76.4
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.8e-150 534.3 354 76.0
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.8e-150 534.3 333 82.0
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 7.8e-150 534.3 359 78.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.6e-149 530.8 368 76.1
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.6e-149 530.8 368 76.1
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.5e-148 530.0 377 73.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-148 529.6 332 81.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.9e-148 529.6 374 75.1
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 4.3e-148 528.5 346 77.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 5.6e-148 528.1 371 75.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.3e-148 527.7 371 74.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 7.3e-148 527.7 351 76.4
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-147 526.9 371 75.2
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-147 526.9 371 75.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.1e-147 526.2 320 83.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.1e-147 526.2 355 76.3
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.6e-147 525.4 346 78.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 4.7e-147 525.0 368 75.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 4.7e-147 525.0 351 75.8
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.2e-145 520.4 367 74.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-145 520.4 382 72.5
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.0e-145 519.6 342 79.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.4e-145 518.8 375 73.9
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.4e-145 518.8 375 73.9
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.4e-145 518.5 324 81.2
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.4e-144 514.6 300 84.7
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.4e-143 513.5 358 76.0
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.1e-143 511.9 349 74.5
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.1e-143 511.9 300 84.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.1e-143 511.9 432 65.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 5.4e-143 511.5 285 89.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.2e-143 510.8 349 74.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.7e-142 509.2 322 80.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.3e-140 501.1 285 87.4
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-139 500.0 378 71.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.4e-138 496.9 324 77.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.5e-137 493.4 325 76.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 4.9e-136 488.4 332 73.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-135 487.3 376 70.7
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 8.6e-133 477.6 288 84.0
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.9e-132 476.5 322 73.9
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.5e-132 476.1 312 76.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.3e-132 474.6 330 74.5
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.8e-130 469.9 363 68.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.2e-129 467.2 332 70.5
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.3e-128 463.8 300 75.7
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 3.7e-128 462.2 299 76.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 8.4e-128 461.1 322 71.7
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.0e-126 454.9 329 74.5
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.6e-113 412.9 297 70.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.0e-109 401.0 313 67.1
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.9e-108 396.7 250 82.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.5e-108 396.4 266 79.3
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.2e-103 379.4 260 77.7
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.5e-100 369.8 291 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 6.9e-90 335.1 277 65.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.0e-85 321.2 313 60.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 8.5e-72 275.0 310 52.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 5.5e-71 272.3 175 81.1
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 8.8e-69 265.0 189 75.7
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.2e-67 260.4 352 47.7
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.7e-48 197.6 113 87.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 6.5e-48 195.7 112 83.0
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 4.1e-42 176.4 220 53.2
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.8e-40 169.9 172 59.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.8e-40 169.9 172 59.9
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 5.4e-34 149.4 101 72.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.5e-33 146.7 99 73.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.5e-33 146.7 99 73.7
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 7.8e-33 145.6 284 34.9
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.3e-32 144.1 99 72.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.0e-32 143.7 98 72.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 5.0e-32 142.9 103 68.9
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 9.5e-31 138.7 104 65.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.3e-29 134.0 103 64.1
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.7e-19 101.3 64 76.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.1e-17 94.4 67 76.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.3e-16 90.9 61 80.3
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.0e-16 90.5 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.9e-08 63.5 35 77.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-07 62.0 102 42.2


User provided reference genes

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