Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 5.5e-170 600.9 309 100.0
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.2e-162 574.7 309 95.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.3e-136 489.2 310 81.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 3.7e-134 481.9 309 80.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.6e-132 476.5 314 79.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.0e-132 474.6 310 80.3
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 6.0e-132 474.6 310 80.3
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.7e-131 473.0 308 79.9
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.3e-131 472.6 313 78.6
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 6.6e-131 471.1 316 79.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.5e-130 469.9 313 78.0
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-130 469.5 310 79.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 7.3e-130 467.6 316 78.8
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 7.3e-130 467.6 307 79.8
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 7.3e-130 467.6 316 78.5
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.3e-130 467.6 309 77.0
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.3e-130 467.6 309 77.0
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 7.3e-130 467.6 309 80.9
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 4.7e-129 464.9 311 77.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.2e-128 461.5 309 76.4
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.8e-128 461.1 311 76.8
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 2.0e-127 459.5 310 78.7
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.6e-127 459.1 311 77.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 9.9e-127 457.2 316 77.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.3e-126 456.8 316 77.2
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.9e-126 455.7 315 75.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.4e-125 453.4 311 75.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.4e-125 453.4 311 75.2
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.4e-125 452.6 310 77.4
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 3.2e-125 452.2 310 76.5
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 4.2e-125 451.8 309 77.3
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 4.2e-125 451.8 309 77.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 9.3e-125 450.7 311 74.6
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.0e-124 448.0 309 75.4
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.8e-124 447.6 310 73.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.7e-123 446.4 311 76.8
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.3e-123 446.0 312 75.0
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 3.0e-123 445.7 316 74.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 8.7e-123 444.1 311 74.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.1e-122 443.7 312 75.0
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 4.3e-122 441.8 315 74.6
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 4.3e-122 441.8 311 76.2
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.6e-122 441.4 311 76.2
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 7.3e-122 441.0 350 67.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.6e-121 439.9 312 74.4
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 75.9
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.8e-121 439.1 315 73.7
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 6.2e-121 438.0 312 74.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 6.2e-121 438.0 311 74.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 8.1e-121 437.6 309 74.4
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 8.1e-121 437.6 309 73.5
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 8.1e-121 437.6 308 77.3
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.1e-120 437.2 316 72.5
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.4e-120 436.8 310 74.5
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.4e-120 436.8 311 75.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.4e-120 436.0 311 73.0
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.4e-120 436.0 311 74.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.3e-120 434.9 309 73.8
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.3e-120 434.9 310 75.5
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 6.9e-120 434.5 310 73.9
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 9.0e-120 434.1 310 74.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.5e-119 433.3 309 74.8
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.6e-119 432.6 316 72.5
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 3.4e-119 432.2 312 71.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 9.9e-119 430.6 311 74.3
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.7e-118 429.9 309 73.5
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.9e-118 429.1 311 73.0
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 3.8e-118 428.7 315 73.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.2e-117 425.6 321 70.1
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.2e-117 425.6 311 73.6
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 9.3e-117 424.1 310 74.5
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.2e-116 423.7 313 70.6
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.6e-116 423.3 317 71.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.6e-116 423.3 311 74.9
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.7e-116 422.5 270 81.5
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 3.5e-116 422.2 316 70.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 7.9e-116 421.0 290 77.2
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.3e-115 420.2 315 71.4
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.7e-115 419.9 312 72.4
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.0e-115 419.1 310 72.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.0e-115 419.1 310 72.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.1e-115 418.3 345 65.8
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 6.6e-115 417.9 310 72.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 6.6e-115 417.9 310 72.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 6.6e-115 417.9 310 72.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-114 416.8 315 70.8
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.9e-114 416.4 310 71.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.3e-114 415.2 321 70.4
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.8e-113 412.5 311 70.4
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.6e-113 412.1 311 69.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 6.2e-113 411.4 306 71.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 8.1e-113 411.0 315 70.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.1e-112 410.6 310 70.3
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.9e-112 407.9 310 71.6
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.6e-108 396.7 311 69.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 3.5e-108 395.6 310 68.4
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.9e-106 389.8 224 87.1
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.8e-105 385.2 285 70.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 9.0e-104 380.9 248 79.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.7e-102 376.7 328 62.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 1.9e-101 373.2 346 60.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.7e-100 369.4 348 58.9
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.0e-99 367.5 336 62.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.0e-99 365.9 290 68.6
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.9e-99 365.5 269 74.3
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.3e-98 362.5 311 67.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.3e-96 355.1 267 71.9
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 7.6e-95 351.3 306 60.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.4e-94 347.8 266 68.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-93 347.4 211 82.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.2e-93 345.5 203 84.7
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-91 340.5 317 57.1
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.3e-88 328.6 314 61.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.2e-86 323.2 309 57.3
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.5e-86 321.6 308 59.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.2e-81 306.6 309 56.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.2e-78 296.6 185 80.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.1e-75 285.4 294 57.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 7.2e-69 265.0 233 66.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.4e-64 250.8 415 43.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-62 244.6 383 43.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-62 244.6 251 59.4
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.0e-59 232.6 191 70.2
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 9.8e-50 201.4 192 57.8
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.0e-48 195.3 310 44.8
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 3.5e-47 193.0 117 85.5
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.0e-46 191.4 193 58.0
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.9e-46 189.9 224 46.4
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.2e-41 173.7 239 44.8
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.2e-40 168.3 122 71.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.7e-38 164.1 199 48.2
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.8e-36 156.8 95 84.2
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.0e-35 154.8 126 64.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.0e-35 154.8 126 64.3
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.2e-34 151.4 266 43.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-34 151.0 190 46.8
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 7.5e-34 148.7 96 81.2
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.7e-33 147.5 122 66.4
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-32 144.4 93 83.9
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 7.8e-31 138.7 138 55.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.6e-28 129.8 80 82.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 3.7e-25 119.8 239 38.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.6e-22 109.0 110 60.9
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.6e-21 105.9 99 60.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-18 97.8 63 79.4
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.5e-13 81.3 128 40.6
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.2e-11 72.8 42 76.2
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.2e-08 63.5 42 64.3
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 5.4e-08 62.8 35 71.4
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 9.3e-08 62.0 46 63.0
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.6e-07 61.2 37 75.7
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 1.0e-06 58.5 41 61.0
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.3e-06 58.2 57 63.2
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.3e-06 57.4 62 56.5
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 5.1e-06 56.2 37 64.9
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 5.1e-06 56.2 37 59.5
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 6.6e-06 55.8 37 59.5


User provided reference genes

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