Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.2e-172 609.0 337 100.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.6e-167 592.8 337 96.4
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.1e-162 575.9 337 94.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.1e-161 571.2 338 93.8
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.7e-160 567.8 337 92.9
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.7e-160 567.0 337 92.9
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 9.7e-160 567.0 337 92.9
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 8.2e-159 563.9 337 92.3
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.8e-158 562.8 337 91.1
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 6.9e-158 560.8 337 92.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.2e-157 560.1 337 92.6
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.6e-157 558.9 337 90.2
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.9e-156 555.4 349 89.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.1e-155 553.5 337 90.5
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.9e-155 552.7 337 90.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.9e-155 552.7 337 91.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.5e-155 552.4 337 86.1
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 91.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 3.6e-154 548.5 338 89.6
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 3.6e-154 548.5 337 89.6
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 4.6e-154 548.1 372 84.7
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 6.1e-154 547.7 337 89.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 7.9e-154 547.4 337 89.3
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.8e-153 546.2 339 89.1
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.3e-153 545.8 339 90.0
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.0e-153 545.4 338 90.8
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 90.2
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 89.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 89.0
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 89.6
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.1e-152 543.5 337 88.7
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.0e-152 542.7 337 89.0
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 89.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 4.3e-152 541.6 338 86.7
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 88.7
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 7.4e-152 540.8 338 87.0
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.3e-151 540.0 337 89.3
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.5
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.2e-151 537.3 336 87.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 90.5
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.1e-150 535.4 338 85.8
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 4.1e-150 535.0 354 86.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 5.3e-150 534.6 338 87.3
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 6.9e-150 534.3 338 87.9
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 85.8
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.9e-149 531.2 337 87.5
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 86.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.2e-148 529.3 341 88.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 5.0e-148 528.1 337 88.4
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 6.5e-148 527.7 338 87.3
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.5e-148 527.7 337 86.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.5e-148 527.7 340 87.9
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 86.9
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.1e-147 526.9 337 88.7
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.5e-147 525.8 340 87.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.2e-147 525.4 337 87.5
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.2e-147 525.4 337 87.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.2e-147 524.2 337 87.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.2e-147 524.2 337 87.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.2e-146 523.5 338 85.8
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.2e-146 523.5 337 80.7
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.2e-146 523.5 337 85.8
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-146 523.5 340 87.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 339 87.0
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.7e-146 522.3 337 86.4
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 4.7e-146 521.5 321 90.0
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 7.9e-146 520.8 355 82.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 7.9e-146 520.8 355 82.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 3.0e-145 518.8 339 86.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 86.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.0e-144 516.2 367 81.5
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.6e-144 515.8 340 85.6
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 5.7e-144 514.6 337 85.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.2e-143 512.7 330 88.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.8e-142 509.6 330 86.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 84.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 84.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 7.0e-142 507.7 337 84.6
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 9.1e-142 507.3 346 83.8
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.6e-141 505.8 354 81.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.5e-141 505.0 337 82.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 86.1
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 85.2
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.0e-140 503.8 359 80.8
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.2e-140 502.7 349 82.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 3.8e-140 501.9 321 88.2
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 84.9
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.1e-139 500.4 340 81.8
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.5e-139 499.2 377 76.9
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.5e-139 499.2 321 87.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 5.5e-139 498.0 347 81.3
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 9.4e-139 497.3 337 78.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.1e-138 496.1 337 82.8
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.7e-138 495.7 333 85.0
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 6.3e-135 484.6 337 81.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.2e-135 484.2 337 83.1
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 8.2e-135 484.2 349 80.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.4e-134 482.6 368 77.2
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.2
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 85.2
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 2.9e-132 475.7 337 74.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.5e-132 474.6 365 76.7
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.5e-132 474.6 365 76.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.9e-131 473.0 337 78.9
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 4.2e-131 471.9 305 88.9
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.4e-126 456.8 338 79.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.8e-126 456.4 337 77.7
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.3e-121 439.5 274 93.1
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.0e-121 439.1 334 79.9
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 5.7e-120 434.9 284 87.0
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.4e-118 429.5 352 71.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.3e-116 423.7 516 54.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.0e-113 412.5 223 88.8
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.0e-108 397.5 321 76.0
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.6e-108 394.4 339 73.2
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 9.5e-107 391.0 255 91.0
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.3e-103 380.6 320 75.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-96 357.5 337 66.5
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.4e-96 355.9 277 75.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.1e-90 336.7 337 63.8
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 4.4e-88 328.9 381 48.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 4.3e-83 312.4 330 53.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 4.0e-81 305.8 147 96.6
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 5.1e-68 262.3 180 73.9
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 7.6e-64 248.4 211 77.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.8e-60 237.3 329 45.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 4.6e-53 212.6 110 90.9
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 4.5e-48 196.1 165 70.9
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-42 177.6 82 96.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.3e-42 175.6 91 96.7
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.3e-36 157.1 90 93.3
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.4e-33 147.9 90 85.6
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-22 111.7 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.0e-20 103.2 64 87.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.0e-16 90.9 201 27.4
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.5e-16 90.1 266 28.2
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.2e-14 83.6 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.4e-12 78.2 39 87.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.3e-12 77.4 82 79.3
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.6e-11 73.9 54 66.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.1e-09 68.6 30 93.3


User provided reference genes

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