Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 7.0e-163 577.4 328 100.0
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.5e-152 543.1 328 95.1
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.2e-143 513.5 330 89.4
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.0e-129 467.2 328 84.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 7.3e-128 461.1 328 82.3
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 6.2e-127 458.0 328 81.7
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 4.0e-126 455.3 328 81.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.9e-126 454.1 328 82.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 8.9e-126 454.1 331 81.9
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 4.4e-125 451.8 328 81.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.3e-124 450.3 329 81.8
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.3e-124 450.3 331 81.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.9e-123 446.4 331 81.0
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.4e-123 446.0 328 81.4
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.2e-122 443.7 330 80.0
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.2e-122 443.7 331 79.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.6e-122 443.4 329 80.9
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.5e-122 442.2 330 80.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.9e-121 438.7 328 79.0
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.6e-121 437.6 332 79.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 5.6e-120 434.9 328 76.8
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 5.6e-120 434.9 328 77.1
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.1e-119 433.0 341 76.2
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.8e-119 432.6 333 78.1
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.8e-119 432.6 329 76.6
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.7e-119 431.8 323 79.6
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 4.7e-119 431.8 330 80.0
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 4.7e-119 431.8 328 77.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 6.2e-119 431.4 329 77.2
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 8.1e-119 431.0 329 78.4
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.1e-118 430.6 328 79.3
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.4e-118 430.3 332 76.2
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.8e-118 429.9 335 76.1
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.8e-118 429.9 337 76.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 2.3e-118 429.5 333 75.4
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.0e-118 428.7 328 79.0
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 6.8e-118 427.9 330 78.2
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.2e-117 427.2 328 76.8
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.5e-117 426.8 329 77.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.5e-117 426.8 328 77.1
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.6e-117 426.0 330 77.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 2.6e-117 426.0 325 77.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 4.4e-117 425.2 332 75.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.4e-117 425.2 328 76.5
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.4e-117 425.2 330 76.4
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.4e-117 425.2 335 75.2
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 5.8e-117 424.9 331 79.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 7.5e-117 424.5 328 77.7
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.9e-116 422.5 329 75.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.7e-116 422.2 328 75.0
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 3.7e-116 422.2 360 72.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 4.9e-116 421.8 328 74.7
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 6.4e-116 421.4 332 78.3
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 8.3e-116 421.0 330 76.7
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.2e-115 419.1 334 76.6
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 3.2e-115 419.1 329 74.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.1e-115 418.7 328 76.2
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 7.1e-115 417.9 330 75.2
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.1e-115 417.9 323 76.5
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 9.2e-115 417.5 329 74.2
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 9.2e-115 417.5 325 76.3
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.7e-114 416.0 329 74.5
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.5e-114 415.6 330 74.5
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.5e-114 415.6 331 76.4
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.6e-114 415.2 331 76.4
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 7.8e-114 414.5 330 74.8
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 7.8e-114 414.5 329 74.5
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.8e-114 414.5 338 75.4
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.7e-113 413.3 335 75.5
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.3e-113 412.9 328 73.2
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 3.9e-113 412.1 334 75.4
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.9e-113 412.1 328 73.8
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 6.6e-113 411.4 329 74.2
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 6.6e-113 411.4 328 72.6
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 8.6e-113 411.0 330 74.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.1e-112 410.6 330 73.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.1e-112 410.6 328 74.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.5e-112 410.2 330 74.2
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.9e-112 409.8 332 76.2
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.9e-112 409.8 329 75.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.5e-112 409.5 330 74.5
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.3e-112 408.7 323 75.2
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 7.3e-112 407.9 326 75.8
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 7.3e-112 407.9 332 73.5
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 9.5e-112 407.5 381 67.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.6e-111 406.8 329 74.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 2.1e-111 406.4 282 80.9
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 4.7e-111 405.2 330 72.7
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.7e-111 405.2 342 71.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-110 404.1 330 73.3
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.3e-110 402.9 343 71.4
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.1e-110 402.5 320 75.9
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.1e-110 402.5 333 73.3
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.2e-110 401.7 329 73.6
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 5.2e-110 401.7 325 76.3
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 6.8e-110 401.4 330 72.7
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 6.8e-110 401.4 332 72.3
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.5e-109 400.2 330 72.7
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-109 400.2 333 72.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-109 400.2 333 72.7
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.5e-109 400.2 328 75.6
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.6e-109 399.4 331 73.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 7.6e-109 397.9 328 73.2
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 7.6e-109 397.9 328 73.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 7.6e-109 397.9 328 73.2
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-108 397.1 328 72.9
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.2e-108 396.4 325 72.6
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.9e-108 396.0 329 73.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.9e-108 396.0 329 73.3
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.9e-108 396.0 333 73.0
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.9e-108 396.0 307 69.4
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 6.4e-108 394.8 329 72.3
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 6.4e-108 394.8 330 71.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 7.1e-107 391.3 326 70.9
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.6e-106 390.2 329 72.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.6e-106 388.7 328 72.0
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 7.8e-106 387.9 325 72.0
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.0e-105 387.5 324 72.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.0e-105 387.5 329 71.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.0e-105 387.5 329 71.4
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.3e-105 387.1 324 73.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.3e-105 387.1 329 72.0
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.0e-105 386.0 303 76.2
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.9e-105 385.6 255 76.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 8.6e-105 384.4 318 73.9
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.9e-104 383.3 323 72.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.5e-104 382.9 329 70.8
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 3.3e-104 382.5 329 70.8
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 3.3e-104 382.5 329 70.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 2.1e-103 379.8 282 78.0
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.1e-103 379.8 304 75.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 6.2e-103 378.3 303 75.2
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.1e-102 375.9 330 71.8
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 5.2e-102 375.2 273 76.9
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 6.8e-102 374.8 260 84.6
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 7.6e-101 371.3 305 75.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.4e-99 367.1 306 73.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 4.2e-99 365.5 334 67.4
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 7.8e-98 361.3 309 70.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.9e-97 359.0 231 90.9
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.9e-96 356.7 268 76.1
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.1e-94 350.9 308 69.8
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.3e-94 348.6 328 59.5
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 9.0e-94 347.8 333 68.2
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.4e-92 341.7 226 88.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.4e-91 339.7 231 83.5
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.0e-86 322.4 328 64.0
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.0e-86 322.4 328 64.0
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 6.9e-86 321.6 365 60.0
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 2.2e-84 316.6 323 60.7
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.3e-81 306.6 276 63.0
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.8e-79 299.7 236 80.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.4e-78 297.4 255 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 9.0e-78 294.7 252 60.7
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.4e-75 287.3 250 58.4
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 4.2e-75 285.8 262 71.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 7.9e-74 281.6 196 83.7
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.0e-73 279.6 287 58.2
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.9e-72 276.9 256 73.8
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 3.3e-72 276.2 247 74.1
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 6.1e-58 228.8 276 46.4
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.6e-56 223.4 149 75.8
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.1e-54 218.0 311 44.4
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.4e-53 213.0 125 84.0
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.1e-50 203.8 124 82.3
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.6e-50 203.0 149 70.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 4.5e-45 186.0 195 69.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.9e-43 180.6 146 69.9
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-40 171.4 201 64.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 7.5e-32 142.1 139 61.2
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.3e-31 141.4 261 39.1
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.3e-31 141.4 108 76.9
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.1e-30 138.3 156 50.6
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.3e-28 131.3 85 74.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 6.3e-23 112.5 78 71.8
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.0e-17 95.1 107 66.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.6e-16 90.5 122 48.4
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 5.7e-16 89.4 175 48.0
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.3e-15 88.2 83 78.3
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-14 83.6 176 47.2
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 3.3e-11 73.6 93 46.2
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 1.4e-06 58.2 36 86.1
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 3.2e-06 57.0 81 34.6


User provided reference genes

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