Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 0.0e+00 1504.2 766 100.0
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 0.0e+00 1379.0 796 89.7
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 8.0e-287 990.3 785 65.4
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 4.9e-276 954.5 768 66.9
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 7.3e-272 940.6 754 64.3
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 6.2e-271 937.6 754 64.1
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 8.4e-268 927.2 794 61.2
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 3.4e-261 905.2 731 65.3
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 3.0e-257 892.1 784 60.3
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 3.9e-257 891.7 761 62.4
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.5e-256 889.8 698 65.6
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.5e-253 879.8 729 63.4
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 2.0e-253 879.4 733 63.0
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.4e-251 873.2 767 60.8
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.9e-251 872.8 729 63.0
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 7.1e-251 870.9 745 62.1
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.2e-250 870.2 756 61.5
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 2.1e-250 869.4 766 57.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 3.0e-249 865.5 786 59.4
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 5.1e-249 864.8 737 61.6
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.5e-248 863.2 924 52.6
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.3e-247 860.1 709 63.2
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.5e-245 853.2 734 61.0
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 5.8e-245 851.3 726 61.4
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 5.8e-245 851.3 728 62.1
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 9.9e-245 850.5 727 61.2
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 5.5e-243 844.7 761 58.9
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.2e-242 843.6 767 57.4
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 3.0e-241 839.0 768 56.6
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 6.7e-241 837.8 762 58.3
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 4.3e-240 835.1 784 58.0
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 9.6e-240 833.9 761 58.3
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 3.7e-239 832.0 759 58.2
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.2e-236 822.8 701 60.5
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 1.4e-235 820.1 734 57.9
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 5.5e-235 818.1 674 61.3
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 6.7e-233 811.2 802 55.0
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 2.5e-232 809.3 793 55.5
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 3.3e-232 808.9 736 58.3
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 8.2e-231 804.3 761 56.5
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.4e-230 803.5 761 56.8
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 2.4e-230 802.7 727 57.6
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.2e-229 800.4 745 55.7
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 2.6e-229 799.3 734 58.2
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.8e-228 795.4 761 56.2
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.2e-226 790.4 783 55.0
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 2.7e-226 789.3 1110 43.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.0e-225 785.8 727 56.1
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.0e-225 785.8 761 55.5
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 5.7e-224 781.6 784 54.3
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.3e-223 780.4 793 55.4
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 2.2e-223 779.6 699 58.7
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.4e-222 776.9 756 55.7
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.4e-222 776.9 779 53.7
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 6.9e-222 774.6 767 55.1
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 2.6e-221 772.7 767 55.3
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 5.9e-221 771.5 767 53.8
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 2.9e-220 769.2 740 55.5
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 8.5e-220 767.7 764 54.8
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 1.9e-219 766.5 777 54.2
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 3.2e-219 765.8 735 54.4
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 2.1e-218 763.1 780 53.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 4.7e-218 761.9 740 54.5
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.0e-217 760.8 785 52.7
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 2.3e-217 759.6 741 54.8
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 5.1e-217 758.4 740 54.3
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.3e-216 755.7 793 52.5
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 9.7e-216 754.2 727 55.8
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.3e-215 753.8 626 61.3
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 3.7e-215 752.3 684 58.5
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.1e-214 749.2 741 52.5
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 4.1e-214 748.8 658 58.8
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-213 747.3 765 53.3
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-213 746.9 724 55.8
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.3e-212 743.8 690 55.5
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 4.2e-211 738.8 737 53.9
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 4.2e-211 738.8 703 54.6
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.6e-210 736.9 765 52.7
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 3.9e-209 732.3 755 53.2
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.5e-208 730.3 708 56.2
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 2.6e-208 729.6 720 53.9
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.7e-207 726.9 611 60.7
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.1e-206 724.2 697 55.5
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.7e-204 716.8 658 56.7
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 4.2e-203 712.2 706 52.7
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 9.4e-203 711.1 646 54.6
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.2e-202 710.7 720 54.0
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.3e-200 702.6 608 60.0
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.6e-197 693.7 737 52.9
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 3.1e-190 669.5 662 53.2
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.9e-188 662.9 628 56.5
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 8.0e-186 654.8 691 49.5
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.1e-179 634.4 708 50.3
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 8.9e-177 624.8 648 52.6
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.4e-174 617.5 699 50.6
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.7e-167 594.0 615 50.4
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 4.0e-161 572.8 685 46.0
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.1e-150 538.1 476 58.0
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.7e-148 530.8 674 46.3
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 7.9e-125 452.2 401 60.6
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.8e-121 441.0 699 41.1
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 1.4e-108 398.3 412 50.5
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 8.8e-108 395.6 348 60.3
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 1.8e-105 387.9 684 36.1
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 2.6e-104 384.0 712 36.2
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.3e-103 381.7 592 39.0
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 7.0e-97 359.4 268 68.7
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.8e-92 344.7 532 41.4
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 5.2e-84 316.6 568 35.9
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 8.8e-84 315.8 680 35.3
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.4e-83 313.9 357 48.2
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.0e-75 288.1 664 37.3
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.2e-57 227.6 196 55.6
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 3.0e-55 221.1 590 30.8
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.3e-47 195.7 643 26.4
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 3.3e-38 164.5 671 25.2
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 7.3e-38 163.3 238 45.4
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.2e-33 147.9 136 56.6
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 7.1e-33 146.7 167 48.5
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.5e-27 129.0 149 51.7
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.5e-27 129.0 145 51.0
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 7.6e-19 100.1 173 39.9
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 3.5e-16 91.3 92 53.3
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 8.7e-15 86.7 66 66.7
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.9e-14 85.5 73 60.3
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.9e-14 85.5 122 41.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 1.8e-12 79.0 139 34.5
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 5.3e-12 77.4 118 39.0
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.5e-09 68.6 65 49.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-07 60.5 48 52.1


User provided reference genes

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