Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 7.7e-46 186.8 95 100.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.8e-40 167.5 95 87.4
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 6.3e-40 167.2 94 89.4
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.6e-38 161.8 95 83.2
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.0e-37 159.8 95 81.1
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.3e-37 159.5 95 81.1
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.3e-37 159.5 95 80.0
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.7e-37 159.1 95 81.1
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.7e-37 159.1 95 81.1
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.9e-37 158.3 95 81.1
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.9e-37 158.3 95 80.0
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 3.8e-37 157.9 95 80.0
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 5.0e-37 157.5 95 78.9
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 5.0e-37 157.5 95 78.9
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 5.0e-37 157.5 95 77.9
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 5.0e-37 157.5 95 76.8
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 6.5e-37 157.1 95 80.0
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 8.5e-37 156.8 95 80.0
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.1e-36 156.4 95 80.0
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.1e-36 156.4 95 78.9
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.1e-36 156.4 95 77.9
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.4e-36 156.0 94 77.7
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 1.4e-36 156.0 95 78.9
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.4e-36 156.0 95 78.9
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.9e-36 155.6 95 78.9
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.9e-36 155.6 95 76.8
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.5e-36 155.2 95 77.9
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 2.5e-36 155.2 95 78.9
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.2e-36 154.8 95 77.9
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 5.5e-36 154.1 93 78.5
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 7.2e-36 153.7 95 78.9
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.2e-36 153.7 93 77.4
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 9.4e-36 153.3 92 79.3
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 9.4e-36 153.3 95 74.7
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.2e-35 152.9 95 74.7
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.2e-35 152.9 95 76.8
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.2e-35 152.9 95 76.8
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.2e-35 152.9 95 74.7
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 75.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 75.5
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.7e-35 151.8 95 76.8
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.6e-35 151.4 95 76.8
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 3.6e-35 151.4 95 76.8
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 3.6e-35 151.4 95 75.8
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.7e-35 151.0 93 77.4
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 4.7e-35 151.0 93 75.3
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 1.0e-34 149.8 95 75.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.0e-34 149.8 92 76.1
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.8e-34 149.1 97 77.3
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.8e-34 149.1 97 76.3
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.8e-34 149.1 94 77.7
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.8e-34 149.1 84 83.3
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.8e-34 149.1 89 79.8
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.8e-34 149.1 89 79.8
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.3e-34 148.7 92 77.2
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.0e-34 148.3 95 74.7
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 3.0e-34 148.3 87 81.6
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 3.0e-34 148.3 96 75.0
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 3.0e-34 148.3 95 76.8
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 3.9e-34 147.9 94 72.3
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 72.3
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 75.5
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 72.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 5.2e-34 147.5 89 78.7
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 5.2e-34 147.5 89 79.8
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 6.7e-34 147.1 95 74.7
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 8.8e-34 146.7 95 76.8
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 8.8e-34 146.7 95 76.8
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 8.8e-34 146.7 94 73.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 8.8e-34 146.7 95 73.7
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 8.8e-34 146.7 95 76.8
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.1e-33 146.4 94 71.3
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.5e-33 146.0 95 72.6
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 4.4e-33 144.4 93 72.0
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 5.7e-33 144.1 84 79.8
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 5.7e-33 144.1 93 74.2
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 7.4e-33 143.7 89 76.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.3e-32 142.9 89 74.2
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.3e-32 142.9 83 80.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.7e-32 141.4 89 75.3
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.7e-32 141.4 89 75.3
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.8e-32 141.0 96 72.9
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.1e-31 139.8 120 60.0
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.4e-31 139.4 81 82.7
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.8e-31 139.0 91 71.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 4.1e-31 137.9 94 68.1
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 5.3e-31 137.5 94 68.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.2e-30 136.3 86 73.3
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 1.6e-30 136.0 101 70.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 7.7e-30 133.7 86 75.6
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.0e-29 133.3 103 66.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.0e-29 133.3 93 73.1
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.0e-29 133.3 93 73.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.0e-29 133.3 93 72.0
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.3e-29 132.9 84 76.2
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.3e-29 132.9 84 76.2
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.3e-29 132.9 84 76.2
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.0e-29 131.0 75 89.3
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 9.4e-28 126.7 86 64.0
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.0e-26 123.2 78 74.4
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.2e-25 119.8 75 80.0
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.5e-25 119.4 64 84.4
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 2.0e-25 119.0 75 78.7
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 5.7e-25 117.5 83 67.5
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 7.5e-25 117.1 75 78.7
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 6.3e-24 114.0 75 74.7
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 8.2e-24 113.6 75 73.3
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.4e-23 112.1 83 68.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 9.1e-23 110.2 77 74.0
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.0e-22 109.0 95 60.0
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 2.7e-22 108.6 69 76.8
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 5.9e-22 107.5 75 70.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.2e-21 105.5 97 57.7
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 3.8e-21 104.8 71 67.6
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 5.0e-21 104.4 89 61.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 5.0e-21 104.4 89 61.8
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 8.5e-21 103.6 73 65.8
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 4.2e-20 101.3 75 65.3
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 9.4e-20 100.1 90 57.8
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 4.7e-19 97.8 86 55.8
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 6.1e-19 97.4 97 50.5
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.2e-16 89.0 46 82.6
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 2.0e-14 82.4 79 59.5
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.3e-13 79.0 54 75.9
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 3.2e-12 75.1 85 43.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 7.2e-12 73.9 50 74.0
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.1e-11 72.4 58 62.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 8.0e-11 70.5 56 60.7


User provided reference genes

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