Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 5.2e-253 877.9 679 100.0
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 1.2e-217 760.4 682 88.7
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 5.8e-196 688.3 672 86.3
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.2e-164 584.3 663 75.4
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 2.7e-161 573.2 675 75.6
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.5e-159 566.6 605 80.3
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 6.9e-157 558.5 603 80.1
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 1.7e-155 553.9 593 79.3
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.9e-154 550.4 603 78.6
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.6e-153 547.4 673 74.0
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 2.1e-153 547.0 590 78.3
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 2.1e-153 547.0 599 79.5
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 2.1e-153 547.0 598 80.4
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 4.6e-153 545.8 605 79.3
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 1.8e-152 543.9 602 78.1
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 1.5e-151 540.8 595 79.3
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.5e-151 540.0 605 79.2
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 2.5e-151 540.0 603 77.1
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 7.4e-151 538.5 591 80.9
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 7.4e-151 538.5 603 77.6
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 2.4e-149 533.5 603 73.3
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 3.1e-149 533.1 591 77.3
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.2e-148 531.2 603 74.8
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 5.0e-147 525.8 598 74.7
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 5.0e-147 525.8 697 54.7
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.4e-146 524.2 589 73.7
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.7e-145 520.0 593 79.3
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 4.7e-145 519.2 601 75.7
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 3.0e-144 516.5 598 74.4
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 3.0e-144 516.5 589 78.8
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.9e-144 516.2 589 73.0
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 3.9e-144 516.2 562 82.6
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 3.9e-144 516.2 593 78.1
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 5.1e-144 515.8 591 77.7
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 6.7e-144 515.4 589 72.8
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 8.8e-144 515.0 587 78.9
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.0e-143 513.8 589 78.3
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 4.4e-143 512.7 591 76.1
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 1.8e-141 507.3 533 84.6
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 3.5e-140 503.1 606 75.6
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 4.5e-140 502.7 605 75.4
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 5.0e-139 499.2 532 82.9
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 8.8e-136 488.4 581 77.5
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 1.5e-135 487.6 618 71.4
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 2.0e-135 487.3 593 77.4
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.3e-134 484.6 601 75.4
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 4.8e-134 482.6 590 72.5
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 9.1e-133 478.4 582 72.9
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 2.9e-131 473.4 590 72.9
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 3.2e-130 469.9 589 74.7
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 4.7e-129 466.1 587 75.3
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 7.5e-127 458.8 602 72.9
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 4.2e-122 443.0 582 63.9
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 5.5e-122 442.6 570 76.7
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 2.7e-121 440.3 528 78.8
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 4.4e-119 433.0 587 73.4
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 2.4e-117 427.2 605 71.7
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 3.8e-115 419.9 583 71.9
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 9.5e-114 415.2 583 67.9
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.8e-112 411.0 589 65.2
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.8e-112 411.0 590 71.7
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 6.8e-112 409.1 532 75.6
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 3.3e-106 390.2 584 62.8
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 6.8e-104 382.5 586 66.6
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 8.3e-102 375.6 580 70.5
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 1.1e-101 375.2 580 70.5
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 7.8e-100 369.0 600 67.0
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 6.6e-99 365.9 563 47.8
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 1.6e-97 361.3 220 80.5
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 5.2e-96 356.3 586 61.6
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 5.8e-95 352.8 225 77.8
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 2.9e-94 350.5 600 65.0
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-92 345.1 586 61.1
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 6.0e-92 342.8 553 68.0
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.7e-91 341.3 217 77.4
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 3.0e-91 340.5 228 72.4
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 3.3e-90 337.0 601 65.9
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 2.6e-87 327.4 587 65.9
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 9.9e-87 325.5 611 63.2
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.9e-85 321.2 226 69.0
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.2e-84 318.5 583 65.4
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 6.4e-78 296.2 222 67.1
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.2e-77 293.5 196 71.9
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.4e-71 273.9 537 66.9
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 5.4e-69 266.5 213 74.6
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 3.1e-64 250.8 488 69.7
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 7.6e-63 246.1 167 71.9
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 1.1e-53 215.7 192 68.2
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 2.3e-51 208.0 216 47.2
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.9e-50 204.9 205 63.4
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 1.1e-40 172.6 152 71.1
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 1.4e-40 172.2 203 57.1
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.6e-39 167.9 155 68.4
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 6.5e-38 163.3 110 72.7
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 4.2e-37 160.6 124 66.9
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 3.1e-32 144.4 103 70.9
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 4.5e-23 114.0 112 68.8
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 3.0e-19 101.3 70 68.6
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 4.5e-15 87.4 53 73.6
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 4.2e-13 80.9 112 33.0
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 1.1e-08 66.2 120 39.2
Sabra07G0055900 Salix brachista HOM05D000293 ORTHO05D009029 2.4e-08 65.1 50 66.0
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 1.2e-07 62.8 195 21.5
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 2.0e-07 62.0 195 22.1
PSO339G0071 Papaver somniferum HOM05D000001 ORTHO05D000003 4.5e-07 60.8 97 35.1
Cpa.g.c31488 Carica papaya HOM05D007322 ORTHO05D009029 7.7e-07 60.1 63 46.0
Mapoly0063s0054 Marchantia polymorpha HOM05D003056 ORTHO05D003422 2.2e-06 58.5 179 20.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 2.9e-06 58.2 49 55.1
CDE05G3586 Ceratophyllum demersum HOM05D000602 ORTHO05D009029 3.8e-06 57.8 70 40.0
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 3.8e-06 57.8 121 26.4


User provided reference genes

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