Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 2605.5 1305 100.0
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 2385.5 1355 89.2
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1963.0 1331 74.5
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1814.3 1330 69.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1810.8 1333 69.8
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1805.8 1314 70.3
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1805.0 1326 69.6
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1803.9 1331 69.5
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1791.5 1332 69.4
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1776.5 1332 66.7
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1756.5 1318 68.1
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1752.6 1338 67.6
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1748.0 1324 67.6
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1723.4 1333 65.6
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1711.8 1261 67.2
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1707.6 1328 66.5
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1703.7 1323 66.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1699.5 1210 71.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1699.1 1323 66.2
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1697.9 1210 70.7
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1696.4 1324 65.8
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1696.0 1324 65.6
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1692.6 1324 65.6
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1686.8 1336 63.8
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1685.6 1359 62.9
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1681.8 1257 66.7
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1681.0 1324 65.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1674.1 1339 64.7
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1672.9 1307 65.8
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1656.0 1337 63.5
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1648.6 1337 63.2
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1647.5 1436 59.6
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1641.3 1340 62.5
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1640.9 1337 62.2
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1639.4 1346 62.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1635.5 1342 62.3
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1632.5 1331 63.3
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1624.4 1338 62.0
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1623.2 1326 63.1
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1607.8 1325 63.4
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1603.6 1323 62.4
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1596.3 1315 62.4
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1591.2 1329 62.5
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1588.5 1337 62.0
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1579.7 1309 62.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1578.9 1329 61.5
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1575.8 1312 61.8
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1574.7 1309 62.1
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1573.9 1328 61.8
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1569.7 1299 62.8
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1569.3 1336 61.5
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1568.9 1330 60.3
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1565.8 1293 61.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1565.8 1296 63.3
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1563.5 1329 61.2
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1563.1 1333 61.2
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1561.2 1310 61.4
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1560.0 1296 62.3
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1557.7 1314 60.8
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1556.2 1303 61.5
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1552.7 1294 60.8
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1551.2 1293 60.8
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1546.2 1329 60.7
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1543.9 1329 60.3
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1538.5 1310 60.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1537.7 1306 60.6
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1536.2 1303 61.0
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1531.9 1333 60.4
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1530.8 1297 61.1
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1528.8 1331 60.0
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1528.5 1324 60.0
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1505.0 1295 60.2
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1495.7 1324 59.9
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1489.6 1307 59.7
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1481.1 1327 58.9
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1447.2 1302 59.4
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1443.7 1303 58.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1440.2 1302 59.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1438.3 1302 58.5
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1437.2 1308 58.0
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1431.4 1302 58.2
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1431.4 1302 58.2
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1425.6 1306 57.4
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1421.4 1328 56.3
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1414.8 1314 56.8
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1400.2 1244 57.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1393.6 1328 56.9
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1295.0 1280 53.8
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1291.2 1074 62.4
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1280.4 1314 52.8
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1274.6 1313 51.8
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1258.8 1276 52.3
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1249.6 1325 49.1
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1244.2 1245 54.7
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1240.3 985 65.5
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1234.6 982 64.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1222.2 896 67.4
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1114.0 861 65.3
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 9.8e-301 1037.3 1279 48.0
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 4.4e-285 985.3 1331 41.6
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 9.3e-259 897.9 1286 41.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 4.8e-239 832.4 1282 39.9
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 4.2e-235 819.3 945 48.0
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.0e-233 814.7 1131 41.6
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.6e-231 807.4 1283 37.6
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.7e-184 649.4 483 67.9
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.1e-170 604.4 584 57.9
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.8e-169 601.3 580 52.1
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.1e-122 444.9 1142 29.8
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.2e-112 412.5 324 66.0
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 9.3e-110 402.9 290 69.0
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.5e-102 377.1 337 57.9
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.8e-97 362.1 362 55.2
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.3e-90 339.3 1069 28.4
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 3.6e-85 321.2 260 66.5
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.3e-66 259.6 310 48.1
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-61 242.7 205 60.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 4.4e-59 234.6 210 55.7
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 5.4e-57 227.6 301 46.5
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.3e-55 222.2 151 73.5
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.5e-54 216.9 185 58.4
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 6.2e-37 161.0 119 68.1
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 6.8e-36 157.5 128 67.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.7e-26 126.3 672 24.1
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 4.2e-25 121.7 124 51.6
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.3e-15 90.1 80 48.8
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.1e-14 87.0 74 56.8
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 1.5e-11 76.6 85 49.4
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 1.2e-08 67.0 128 33.6
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 3.3e-06 58.9 48 62.5
CAN.G29.3 Capsicum annuum HOM05D005691 ORTHO05D007096 9.6e-06 57.4 84 45.2


User provided reference genes

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