Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 8.6e-165 583.6 291 100.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.6e-158 562.8 291 95.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 3.1e-154 548.5 291 92.4
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 4.0e-154 548.1 291 91.8
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 6.8e-154 547.4 312 88.5
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.6e-153 545.4 291 92.1
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.6e-153 545.4 291 90.4
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.7e-152 542.7 291 91.1
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 6.4e-152 540.8 291 90.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.4e-151 539.7 291 90.7
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.9e-151 539.3 291 89.3
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.9e-151 539.3 291 90.0
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.9e-151 539.3 291 90.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 89.3
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 90.0
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 90.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 3.2e-151 538.5 291 89.0
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 3.2e-151 538.5 291 90.4
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 5.4e-151 537.7 291 90.0
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.4e-151 537.7 291 91.1
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 89.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 2.1e-150 535.8 288 91.0
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 88.3
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 4.6e-150 534.6 291 88.7
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 89.3
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 7.8e-150 533.9 291 88.7
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 7.8e-150 533.9 291 88.3
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.0e-149 533.5 288 90.3
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.0e-149 533.5 287 89.2
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.3e-149 533.1 290 88.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 1.7e-149 532.7 288 89.2
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 88.3
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 88.7
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 3.0e-149 531.9 291 88.3
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 3.9e-149 531.6 291 89.0
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 5.1e-149 531.2 291 88.7
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 5.1e-149 531.2 291 89.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 87.6
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 8.7e-149 530.4 289 89.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.5e-148 529.6 291 88.0
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.5e-148 529.6 288 88.5
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.9e-148 529.3 291 88.0
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.9e-148 529.3 288 89.6
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 87.3
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 88.0
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 4.3e-148 528.1 288 88.5
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 87.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 87.3
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.1e-147 525.8 287 87.8
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 2.8e-147 525.4 288 88.5
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 86.6
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 86.6
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 88.0
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 86.9
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 6.2e-147 524.2 290 87.6
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 6.2e-147 524.2 288 87.8
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-147 523.9 298 84.9
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.1e-147 523.9 289 87.9
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-146 523.5 288 87.2
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 1.4e-146 523.1 273 93.4
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 86.3
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 88.0
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 2.4e-146 522.3 288 88.2
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.1e-146 521.9 296 86.1
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.0e-146 521.5 289 86.2
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 5.2e-146 521.2 290 86.9
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 86.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 5.2e-146 521.2 288 88.2
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 6.9e-146 520.8 291 86.9
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 9.0e-146 520.4 292 87.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 9.0e-146 520.4 291 86.3
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 9.0e-146 520.4 291 86.3
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.2e-145 520.0 288 86.5
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.0e-145 519.2 288 86.5
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 2.0e-145 519.2 272 91.9
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.6e-145 518.8 287 87.5
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 3.4e-145 518.5 292 85.6
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 5.8e-145 517.7 288 85.8
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 86.9
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 5.8e-145 517.7 291 86.9
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 7.6e-145 517.3 290 86.2
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 7.6e-145 517.3 290 85.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 9.9e-145 516.9 295 85.8
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 84.9
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 85.6
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 2.9e-144 515.4 292 85.6
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 87.2
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 4.9e-144 514.6 292 85.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 8.4e-144 513.8 319 79.3
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.9e-143 512.7 290 85.2
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 84.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 7.1e-143 510.8 272 91.9
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.2e-142 510.0 291 85.9
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 2.7e-142 508.8 291 85.6
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 2.7e-142 508.8 291 85.2
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.5e-142 508.4 291 85.2
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 6.0e-142 507.7 272 90.8
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.0e-141 506.9 288 86.1
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-141 506.5 296 84.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 3.0e-141 505.4 276 87.7
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 3.9e-141 505.0 270 90.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.1e-141 504.6 272 89.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 5.1e-141 504.6 272 90.4
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.9e-140 502.7 274 88.7
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 5.6e-140 501.1 290 85.5
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-138 496.5 273 86.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.1e-138 495.4 287 84.3
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.0e-137 492.7 363 69.7
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 4.5e-137 491.5 280 86.8
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.2e-136 489.2 293 83.6
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 3.8e-136 488.4 270 87.0
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-135 486.9 296 82.8
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-135 486.9 296 82.8
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.1e-135 486.9 285 82.8
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 9.3e-135 483.8 272 87.5
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.6e-134 481.5 312 77.6
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 6.0e-134 481.1 284 83.1
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.3e-133 479.9 259 88.8
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 1.8e-133 479.6 272 86.8
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 8.7e-133 477.2 300 79.0
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 9.6e-132 473.8 268 86.9
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.6e-131 473.0 258 89.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.2e-129 466.8 253 88.5
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.4e-129 465.3 253 88.1
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.9e-128 462.2 291 79.4
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 2.5e-127 459.1 283 77.4
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 7.1e-127 457.6 291 79.4
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 7.9e-126 454.1 271 79.0
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.8e-125 453.0 254 87.0
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 2.3e-125 452.6 315 74.6
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 3.0e-125 452.2 247 87.9
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 5.6e-124 448.0 324 70.7
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.4e-122 442.6 238 89.1
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.4e-121 438.7 286 71.7
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 7.6e-121 437.6 242 88.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 5.5e-119 431.4 290 75.5
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 3.8e-112 408.7 275 75.6
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.0e-112 408.3 220 90.9
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.5e-112 407.9 394 58.1
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 6.1e-110 401.4 287 68.3
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-97 360.5 275 68.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 2.0e-97 359.8 191 87.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.9e-95 353.2 198 86.4
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 3.7e-91 339.0 173 93.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 9.1e-90 334.3 271 65.7
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.9e-88 329.3 288 63.5
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 4.0e-85 318.9 278 61.2
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.5e-79 300.4 245 64.9
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-76 290.8 172 79.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.1e-70 268.5 194 71.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 9.8e-68 261.2 261 49.0
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.4e-53 214.2 193 61.7
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 5.8e-52 208.8 131 79.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 5.8e-52 208.8 131 79.4
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 4.0e-37 159.5 142 61.3
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.8e-30 136.7 129 59.7
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.1e-23 114.8 72 69.4
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.5e-23 114.4 91 61.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.3e-23 113.2 66 77.3
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 2.8e-22 110.2 88 65.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.8e-22 110.2 88 65.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.2e-19 100.5 64 73.4
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.5e-15 87.0 51 74.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 5.6e-15 85.9 46 89.1
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 9.0e-13 78.6 45 80.0
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.0e-11 75.1 90 53.3
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.0e-11 75.1 90 53.3
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 7.1e-10 68.9 45 68.9
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.8e-08 64.3 39 82.1
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 4.8e-06 56.2 32 81.2


User provided reference genes

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