Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.2e-149 533.1 270 100.0
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 3.7e-77 292.4 272 59.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 5.2e-47 192.2 269 43.5
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.5e-41 173.3 251 43.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.0e-39 166.4 233 43.8
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 6.8e-39 165.2 266 41.4
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.4e-30 136.3 259 37.1
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.7e-29 132.9 225 37.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.3e-26 124.4 219 40.6
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.0e-26 123.2 270 35.6
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.6e-24 117.5 237 38.0
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.3e-23 113.6 223 37.7
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-22 111.3 286 32.9
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.8e-22 109.0 219 35.6
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-21 107.8 290 30.0
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.7e-21 107.5 220 35.0
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.2e-21 107.1 262 33.2
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 2.9e-21 106.7 187 36.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.9e-21 105.9 285 32.6
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.1e-20 104.8 285 32.6
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.4e-20 104.4 242 36.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 3.2e-20 103.2 239 37.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 4.1e-20 102.8 261 32.2
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 9.2e-20 101.7 304 31.2
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.7e-18 97.4 254 33.5
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.9e-18 96.3 261 34.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.3e-17 93.2 300 30.3
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.3e-17 93.2 286 31.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.3e-17 93.2 292 29.5
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 9.5e-17 91.7 225 31.6
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.2e-16 91.3 293 31.1
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.1e-16 90.5 230 32.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 2.1e-16 90.5 278 30.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-16 89.7 230 32.2
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 4.0e-15 86.3 316 26.3
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 5.2e-15 85.9 259 31.3
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.2e-14 84.7 263 30.0
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.9e-13 80.1 190 33.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 2.9e-13 80.1 235 28.9
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.7e-13 79.7 297 28.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.9e-13 79.3 297 27.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 6.4e-13 79.0 257 29.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 8.4e-13 78.6 227 28.6
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.1e-12 78.2 226 30.5
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.1e-12 78.2 244 27.5
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.9e-12 77.4 254 27.2
Phvul.004G007400 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 9.2e-12 75.1 79 41.8
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 3.5e-11 73.2 239 27.6
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 6.0e-11 72.4 51 58.8
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 6.0e-11 72.4 265 27.2
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.0e-10 71.6 281 26.0
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-10 71.2 251 26.3
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 3.0e-10 70.1 73 50.7
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.9e-10 69.7 51 66.7
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 3.9e-10 69.7 240 27.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 8.6e-10 68.6 76 52.6
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.5e-09 67.8 82 47.6
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.5e-09 67.8 147 37.4
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-09 67.4 257 25.3
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.9e-09 67.4 214 26.6
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.5e-09 67.0 55 61.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 4.3e-09 66.2 82 43.9
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 4.3e-09 66.2 76 51.3
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.3e-09 66.2 77 55.8
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 5.6e-09 65.9 59 57.6
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 7.3e-09 65.5 49 61.2
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 9.6e-09 65.1 52 63.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 9.6e-09 65.1 109 38.5
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.2e-08 64.7 82 48.8
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-08 64.3 291 25.8
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.6e-08 64.3 223 26.5
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.1e-08 63.9 79 45.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.6e-08 63.2 47 61.7
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.6e-08 63.2 77 46.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.6e-08 63.2 47 66.0
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.7e-08 62.8 79 44.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.7e-08 62.8 235 26.8
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 6.2e-08 62.4 226 23.5
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.4e-07 61.2 282 25.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.4e-07 61.2 50 56.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.4e-07 60.5 52 59.6
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.4e-07 60.5 215 27.9
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.1e-07 60.1 229 27.1
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.0e-07 59.7 64 48.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 5.2e-07 59.3 54 55.6
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 6.8e-07 58.9 49 57.1
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.8e-07 58.9 49 57.1
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 6.8e-07 58.9 213 25.8
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.8e-07 58.9 49 57.1
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.8e-07 58.9 76 46.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 8.9e-07 58.5 49 55.1
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.5e-06 57.8 49 55.1
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.5e-06 57.8 49 55.1
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.5e-06 57.8 49 55.1
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.5e-06 57.8 43 62.8
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-06 57.4 82 42.7
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-06 57.4 82 42.7
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 2.0e-06 57.4 82 42.7
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.6e-06 57.0 49 55.1
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.6e-06 57.0 45 57.8
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 3.4e-06 56.6 45 57.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 3.4e-06 56.6 45 55.6
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 4.4e-06 56.2 45 53.3
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 5.8e-06 55.8 180 29.4
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 5.8e-06 55.8 80 41.2
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.8e-06 55.8 84 41.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 7.6e-06 55.5 116 36.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 9.9e-06 55.1 123 32.5


User provided reference genes

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