Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 2.2e-202 708.8 355 100.0
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.0e-172 610.1 353 87.5
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 4.6e-160 568.2 353 81.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-142 509.6 353 72.8
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-142 509.6 353 72.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.9e-134 483.0 363 68.9
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 7.6e-131 471.1 348 67.2
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.3e-130 470.3 354 69.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.3e-126 455.7 367 62.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.5e-123 446.8 355 65.4
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 3.1e-108 396.0 363 55.9
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 2.2e-106 389.8 359 60.4
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.5e-102 377.1 291 64.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.4e-100 369.8 292 63.4
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.9e-98 362.8 293 61.8
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 5.0e-98 362.1 356 53.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 5.0e-98 362.1 350 55.1
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.0e-95 354.4 349 54.2
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.4e-95 354.0 270 60.7
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.8e-95 353.6 279 62.0
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.9e-95 352.4 300 62.0
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 8.8e-95 351.3 347 52.7
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.4e-94 349.0 304 58.9
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.4e-94 349.0 283 61.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 5.7e-94 348.6 352 52.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.7e-93 347.1 304 58.6
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.7e-93 347.1 301 59.1
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.3e-93 345.1 261 61.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.3e-93 345.1 261 61.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.1e-92 344.4 348 48.3
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 5.3e-92 342.0 246 64.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 7.0e-92 341.7 281 59.1
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 7.0e-92 341.7 311 55.3
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 9.1e-92 341.3 287 57.8
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.2e-91 340.9 361 51.0
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.5e-91 340.5 280 57.9
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.5e-91 340.5 352 50.3
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-91 339.7 304 57.9
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.0e-90 337.8 335 52.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 8.5e-90 334.7 270 59.3
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.5e-89 334.0 349 48.7
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.2e-89 332.8 281 56.2
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.2e-89 332.4 287 57.1
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 4.2e-89 332.4 289 55.4
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 9.4e-89 331.3 352 51.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 9.4e-89 331.3 352 51.1
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.2e-88 330.9 350 50.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.6e-88 330.5 351 47.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.1e-88 330.1 269 59.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 4.7e-88 328.9 293 55.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 6.1e-88 328.6 300 55.3
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 8.0e-88 328.2 270 58.5
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.3e-87 326.6 368 48.6
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 3.0e-87 326.2 273 61.5
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.9e-87 325.9 299 54.5
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 5.2e-87 325.5 349 49.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 6.7e-87 325.1 348 48.6
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 6.7e-87 325.1 301 53.8
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 6.7e-87 325.1 341 49.6
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 8.8e-87 324.7 348 48.6
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-86 324.3 268 59.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.1e-86 324.3 354 50.3
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.5e-86 323.9 259 58.7
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.0e-86 323.6 274 58.4
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.0e-86 323.6 273 58.2
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 4.4e-86 322.4 260 59.6
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.4e-86 322.4 265 59.2
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 4.4e-86 322.4 306 54.2
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 9.7e-86 321.2 277 57.4
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 9.7e-86 321.2 351 47.9
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 9.7e-86 321.2 259 59.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 9.7e-86 321.2 307 54.1
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 9.7e-86 321.2 306 53.9
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 9.7e-86 321.2 350 49.4
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.3e-85 320.9 352 48.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.3e-85 320.9 352 48.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-85 319.7 352 48.9
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.7e-85 319.3 352 48.9
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.7e-85 319.3 299 52.8
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.1e-84 317.8 298 52.0
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.4e-84 317.4 350 49.4
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.8e-84 317.0 306 53.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.8e-84 317.0 271 56.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.4e-84 316.6 282 57.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 3.1e-84 316.2 348 48.0
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.1e-84 316.2 349 50.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.3e-84 315.5 237 64.1
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 7.0e-84 315.1 281 56.2
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 7.0e-84 315.1 349 48.7
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 3.5e-83 312.8 259 58.3
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.5e-83 312.8 341 47.5
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 7.7e-83 311.6 268 56.7
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-82 309.3 328 49.1
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 8.5e-82 308.1 349 49.0
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.5e-81 305.4 282 54.6
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.6e-80 303.9 317 49.5
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 2.1e-80 303.5 356 48.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.0e-79 301.2 321 48.9
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.4e-79 300.8 352 48.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 4.0e-79 299.3 320 50.0
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.2e-78 297.7 310 50.3
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.8e-77 292.4 311 52.4
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 9.1e-76 288.1 208 65.4
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.1e-72 276.9 351 43.0
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.1e-72 275.4 208 65.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.5e-70 270.8 233 56.2
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 4.4e-70 269.2 313 47.3
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.7e-69 267.3 211 60.7
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-67 260.4 289 47.8
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 4.7e-56 222.6 314 40.4
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.8e-55 220.7 254 47.6
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 8.9e-55 218.4 193 58.5
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.5e-54 217.6 208 50.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 7.0e-52 208.8 236 50.0
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-50 204.5 295 42.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.7e-50 204.1 136 71.3
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.7e-50 204.1 236 47.0
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 6.6e-50 202.2 238 47.9
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 6.8e-47 192.2 346 35.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.0e-46 190.7 241 46.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 4.4e-46 189.5 282 37.6
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 6.0e-43 179.1 207 49.8
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.0e-43 179.1 126 65.9
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.3e-39 167.2 244 35.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.6e-38 162.2 200 42.0
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.7e-37 161.0 395 31.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.9e-37 159.5 218 44.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 4.6e-35 152.9 270 36.7
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.3e-34 150.6 162 49.4
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 3.0e-34 150.2 102 64.7
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 8.6e-34 148.7 195 45.1
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 6.2e-32 142.5 202 42.6
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.4e-31 141.4 161 46.0
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.4e-30 136.3 142 48.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 4.9e-21 106.3 360 27.8
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 3.0e-18 97.1 198 29.3
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.1e-12 78.6 192 27.6
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 9.3e-12 75.5 109 44.0
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 8.7e-10 68.9 45 64.4
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.6e-08 64.7 81 40.7


User provided reference genes

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