Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 4.7e-106 387.9 198 100.0
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 5.8e-104 380.9 198 98.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 2.3e-100 369.0 198 95.5
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.0e-92 343.6 195 90.3
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 1.3e-92 343.2 197 87.3
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.1e-91 340.1 197 86.8
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.6e-90 335.1 196 85.7
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.7e-87 326.2 198 84.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.9e-87 325.5 193 83.4
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 3.8e-87 325.1 191 84.3
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.1e-86 323.6 194 83.5
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.9e-86 322.8 198 83.8
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.2e-85 320.1 194 82.5
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 6.0e-85 317.8 194 82.0
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.3e-84 316.6 196 80.6
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 1.3e-84 316.6 194 83.0
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.0e-84 315.5 198 82.3
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 3.0e-84 315.5 176 88.1
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 5.1e-84 314.7 197 79.2
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 5.1e-84 314.7 197 79.2
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.1e-83 313.5 198 80.3
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.5e-83 313.2 199 80.4
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.5e-83 312.4 190 84.7
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 8.1e-82 307.4 194 80.4
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 1.1e-81 307.0 198 78.8
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-81 307.0 198 79.3
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.4e-81 306.6 198 78.3
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.8e-81 306.2 198 77.3
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.8e-81 306.2 198 78.8
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 1.8e-81 306.2 202 78.2
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 4.0e-81 305.1 225 73.8
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 4.0e-81 305.1 195 81.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 5.3e-81 304.7 193 80.8
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 5.3e-81 304.7 190 80.5
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 5.3e-81 304.7 194 77.8
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 6.9e-81 304.3 198 78.8
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 9.0e-81 303.9 198 78.3
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 9.0e-81 303.9 196 78.1
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 9.0e-81 303.9 194 80.4
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.2e-80 303.5 194 79.4
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 1.3e-79 300.1 190 77.4
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.7e-79 299.7 197 79.2
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 2.2e-79 299.3 197 76.6
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 2.2e-79 299.3 198 77.3
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 2.2e-79 299.3 198 75.8
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 2.9e-79 298.9 198 76.8
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 3.8e-79 298.5 199 77.4
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 6.4e-79 297.7 199 76.4
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 8.4e-79 297.4 204 75.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.4e-78 296.6 197 79.2
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.9e-78 296.2 192 78.6
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.2e-78 295.0 199 78.4
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.4e-78 294.7 194 76.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.3e-78 293.9 189 76.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.3e-78 293.9 189 76.2
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 1.2e-77 293.5 193 75.1
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.6e-77 293.1 211 73.9
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 1.6e-77 293.1 246 64.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.1e-77 292.7 189 75.7
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 3.5e-77 292.0 190 75.8
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 4.6e-77 291.6 246 64.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 6.0e-77 291.2 187 80.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.5e-75 286.6 190 76.8
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 4.3e-75 285.0 188 75.5
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 7.3e-75 284.3 199 76.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 9.6e-75 283.9 183 78.7
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 2.8e-74 282.3 187 77.0
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 2.8e-74 282.3 190 73.2
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 8.1e-74 280.8 190 74.2
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 8.1e-74 280.8 195 74.9
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.1e-73 280.4 190 76.3
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.4e-73 280.0 196 73.5
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 1.8e-73 279.6 186 74.2
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 1.8e-73 279.6 186 74.2
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.4e-73 279.3 190 72.6
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 4.0e-73 278.5 188 72.9
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.0e-73 278.5 188 72.9
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 5.3e-73 278.1 188 72.9
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 9.0e-73 277.3 192 72.9
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 2.6e-72 275.8 207 70.5
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 5.8e-72 274.6 192 72.9
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 2.9e-71 272.3 190 71.1
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 1.1e-70 270.4 186 73.1
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-70 270.4 184 72.8
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.4e-70 270.0 186 76.3
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 5.5e-70 268.1 186 73.1
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.8e-68 263.1 163 81.0
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 2.3e-68 262.7 192 70.8
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.6e-61 238.4 168 73.2
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 2.3e-60 236.1 194 62.4
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 6.7e-60 234.6 163 71.2
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 8.7e-60 234.2 194 65.5
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 4.3e-59 231.9 184 65.2
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.7e-59 231.5 194 63.4
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 4.8e-58 228.4 147 77.6
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.1e-57 227.3 187 62.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-56 223.0 191 62.8
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 2.5e-54 216.1 141 78.0
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 2.5e-51 206.1 117 90.6
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.3e-50 203.8 138 76.1
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 4.1e-49 198.7 141 73.8
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 3.8e-47 192.2 108 88.0
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 6.5e-47 191.4 252 49.6
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 9.4e-46 187.6 112 82.1
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 2.7e-45 186.0 137 71.5
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 5.1e-44 181.8 112 82.1
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.1e-38 164.1 198 47.5
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 2.7e-37 159.5 119 68.9
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 2.3e-36 156.4 198 47.0
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 1.1e-35 154.1 111 73.0
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 1.1e-35 154.1 115 69.6
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 5.7e-35 151.8 143 59.4
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 2.2e-34 149.8 105 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 5.0e-31 138.7 142 52.1
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 4.1e-25 119.0 140 53.6
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 5.5e-22 108.6 133 49.6
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.7e-21 105.5 62 82.3
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.8e-20 101.7 83 59.0
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.2e-18 96.7 200 34.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.6e-16 90.5 83 54.2
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 3.0e-12 76.3 52 65.4
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 8.8e-12 74.7 109 44.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 6.3e-10 68.6 51 66.7
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.1e-09 65.9 56 53.6
LjContig00564g0014639 Lotus japonicus HOM05D002009 ORTHO05D030873 1.3e-07 60.8 40 70.0


User provided reference genes

Program Settings