Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.1e-193 677.9 352 100.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.1e-181 637.5 350 93.7
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.3e-180 635.6 350 94.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-177 626.3 349 94.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 9.1e-169 597.0 349 89.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-166 590.1 338 89.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.2e-166 588.6 349 87.1
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.0e-163 579.3 343 86.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 5.7e-163 577.8 361 85.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 9.8e-163 577.0 354 85.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.1e-161 573.5 355 84.2
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.8e-161 572.8 354 85.3
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-161 572.8 340 86.8
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 7.7e-160 567.4 343 84.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.0e-159 567.0 362 81.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.6e-157 558.5 352 81.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 3.6e-157 558.5 325 88.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.4e-156 556.6 328 86.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.0e-156 555.1 324 88.3
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.5e-155 553.1 348 81.9
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.4e-155 552.0 343 83.4
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.4e-155 551.6 339 83.2
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 7.5e-155 550.8 342 83.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.3e-154 550.1 348 82.5
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.7e-154 549.7 346 81.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.7e-154 549.7 345 82.0
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 4.9e-154 548.1 326 85.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.9e-154 548.1 327 85.9
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 6.3e-154 547.7 325 86.2
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 8.3e-154 547.4 339 83.8
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-153 547.0 343 81.6
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.4e-153 546.6 325 85.8
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.8e-153 546.2 345 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.4e-153 545.8 327 85.9
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.1e-153 545.4 320 87.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 5.4e-153 544.7 342 83.6
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 7.0e-153 544.3 328 85.4
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 7.0e-153 544.3 348 80.7
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.0e-153 544.3 348 80.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.0e-153 544.3 348 80.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 9.1e-153 543.9 327 85.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 9.1e-153 543.9 342 81.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-152 543.5 342 82.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.0e-152 542.7 346 80.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.0e-152 542.7 328 85.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.7e-152 542.3 346 80.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.5e-152 541.6 346 82.4
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.9e-152 541.2 349 81.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.0e-151 540.4 331 83.1
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.7e-151 539.7 344 80.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.3e-151 539.3 327 84.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.9e-151 538.9 348 80.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 2.9e-151 538.9 359 78.0
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.8e-151 538.5 335 81.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.8e-151 538.5 345 81.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 5.0e-151 538.1 327 82.9
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 6.6e-151 537.7 327 82.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-150 537.0 351 78.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.5e-150 536.6 327 82.6
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.5e-150 535.8 346 80.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.3e-150 535.4 327 83.2
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 9.5e-150 533.9 325 83.7
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.2e-149 533.5 323 83.3
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.1e-149 532.7 348 80.2
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.8e-149 532.3 325 83.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 4.7e-149 531.6 358 78.2
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.7e-149 531.6 339 80.2
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 6.1e-149 531.2 327 82.0
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.0e-148 530.4 324 83.3
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.0e-148 530.4 324 83.3
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.0e-148 530.4 329 83.9
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.4e-148 530.0 355 76.6
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.4e-148 530.0 339 79.9
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-148 530.0 327 83.2
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.8e-148 529.6 339 79.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.8e-148 529.6 339 79.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.8e-148 529.6 355 77.5
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.8e-148 529.6 349 79.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.3e-148 529.3 336 81.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.3e-148 529.3 339 79.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.0e-148 528.9 351 80.1
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.0e-148 528.5 339 79.4
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.0e-148 528.5 350 78.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.0e-148 528.5 350 77.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.2e-148 528.1 346 79.2
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 5.2e-148 528.1 334 82.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 8.9e-148 527.3 350 76.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 8.9e-148 527.3 324 82.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 8.9e-148 527.3 328 81.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.9e-148 527.3 325 81.8
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.2e-147 526.9 327 82.3
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 2.0e-147 526.2 324 81.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.0e-147 526.2 324 81.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.6e-147 525.8 319 83.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.4e-147 525.0 339 79.1
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.4e-147 525.0 339 79.4
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.4e-147 525.0 327 82.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 7.5e-147 524.2 328 81.1
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.3e-146 523.5 355 76.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.7e-146 523.1 339 79.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 4.9e-146 521.5 328 80.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 4.9e-146 521.5 328 80.8
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.9e-146 521.5 325 82.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 6.4e-146 521.2 339 79.1
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 6.4e-146 521.2 339 79.1
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 8.3e-146 520.8 326 81.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.3e-146 520.8 328 80.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.4e-145 520.0 426 67.4
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.8e-145 519.6 321 83.5
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.2e-145 518.8 321 81.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.2e-144 516.9 324 81.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-144 516.9 345 77.7
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.7e-144 515.8 324 81.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.7e-144 515.8 327 80.7
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.7e-144 515.8 324 79.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.0e-143 513.8 345 78.3
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.3e-143 513.5 324 79.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.7e-143 513.1 332 79.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 6.6e-143 511.1 344 76.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.6e-143 510.8 319 83.4
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.1e-142 510.4 416 68.0
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-142 510.0 300 84.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 5.6e-142 508.1 349 75.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.3e-142 507.7 354 75.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.5e-142 507.3 324 79.9
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.5e-142 507.3 324 79.9
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 9.5e-142 507.3 332 78.9
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-140 501.1 341 76.8
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.9e-140 500.7 341 76.5
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-138 495.7 287 87.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.9e-138 495.0 287 87.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-136 490.3 325 76.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-136 490.0 327 78.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-134 483.8 339 74.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.2e-133 478.0 333 74.2
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.1e-132 477.2 291 83.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.1e-132 477.2 329 72.9
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.4e-132 476.9 312 77.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 4.0e-132 475.3 339 73.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.0e-132 475.3 312 77.9
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.4e-131 472.2 327 72.5
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 6.4e-130 468.0 330 72.1
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.3e-130 467.6 326 72.1
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.5e-126 456.8 310 75.5
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.3e-126 455.7 280 84.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.7e-125 451.8 301 74.8
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.3e-124 449.5 299 75.9
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.5e-112 409.1 297 69.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 3.4e-107 392.5 309 65.0
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 5.8e-107 391.7 250 80.8
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.8e-106 389.0 247 82.6
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.1e-104 383.3 256 78.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 4.6e-96 355.5 289 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.0e-90 337.8 231 74.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.1e-88 330.1 291 65.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.2e-73 279.3 199 77.9
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 7.4e-70 268.5 162 84.6
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.2e-69 266.9 308 51.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 8.8e-63 245.0 328 47.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.9e-49 200.7 112 85.7
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.5e-46 191.0 113 85.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 4.2e-41 172.9 195 53.8
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 4.2e-41 172.9 195 53.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 4.7e-40 169.5 177 57.1
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.2e-32 144.8 104 69.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 8.0e-32 142.1 102 70.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 8.0e-32 142.1 102 70.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.0e-31 140.2 286 33.9
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 5.2e-31 139.4 102 69.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.8e-31 139.0 101 68.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 4.4e-30 136.3 106 66.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.4e-28 131.3 107 61.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.0e-27 127.5 106 61.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.3e-18 97.4 64 71.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.0e-18 97.1 67 79.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.3e-17 92.4 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 9.5e-17 92.0 49 91.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 8.1e-08 62.4 38 76.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 8.9e-07 58.9 38 73.7


User provided reference genes

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