Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 5.9e-225 783.9 396 100.0
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.5e-215 752.7 396 93.2
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 9.5e-215 750.0 397 95.0
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 4.9e-211 737.6 396 91.2
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 9.5e-207 723.4 379 94.2
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.8e-201 703.7 400 87.0
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.6e-198 696.0 421 83.4
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.1e-198 695.7 403 86.1
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 4.7e-198 694.5 399 85.5
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.6e-193 679.5 439 78.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.3e-192 675.6 439 78.6
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.3e-187 659.8 395 82.5
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.9e-186 656.0 399 82.0
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.9e-186 656.0 407 81.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 3.2e-186 655.2 391 83.1
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 3.2e-186 655.2 351 89.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.6e-185 652.9 394 81.7
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 2.1e-185 652.5 356 88.5
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.7e-185 652.1 411 80.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.7e-185 652.1 394 81.5
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.6e-185 651.4 359 87.2
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.0e-184 650.2 352 88.9
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.0e-184 648.7 407 80.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.6e-184 647.5 398 82.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 6.6e-184 647.5 359 86.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 8.6e-184 647.1 396 81.6
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.5e-183 646.4 396 80.1
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.9e-183 646.0 358 86.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.9e-183 646.0 407 81.3
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 3.3e-183 645.2 406 81.3
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 7.3e-183 644.0 409 80.0
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 9.5e-183 643.7 404 79.7
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 3.6e-182 641.7 354 85.9
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 8.1e-182 640.6 410 79.8
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 8.1e-182 640.6 360 86.4
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.4e-181 639.0 356 85.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.0e-181 638.3 408 79.7
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 8.9e-181 637.1 360 86.4
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.5e-180 636.3 407 78.9
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.5e-180 636.3 404 79.5
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.5e-180 636.3 407 78.9
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.6e-180 635.6 356 86.5
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 4.4e-180 634.8 404 79.2
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 4.4e-180 634.8 438 74.7
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 5.8e-180 634.4 406 79.1
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.7e-179 632.9 406 78.8
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 3.8e-179 631.7 357 83.8
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 6.4e-179 630.9 392 82.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 6.4e-179 630.9 400 79.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 8.4e-179 630.6 345 87.5
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.4e-178 629.0 402 77.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.6e-177 626.3 362 83.1
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.6e-177 626.3 360 83.9
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 2.7e-177 625.5 329 89.1
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 4.6e-177 624.8 357 84.0
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.0e-176 623.6 359 83.3
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.7e-176 622.9 355 83.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.9e-176 621.7 355 83.7
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.5e-175 619.0 427 73.1
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 5.6e-175 617.8 388 80.2
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 2.8e-174 615.5 408 77.0
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.8e-174 615.5 380 78.7
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.6e-174 615.1 408 77.5
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.1e-173 613.6 367 80.9
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.4e-173 612.5 408 76.7
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.0e-173 611.7 364 81.6
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.2e-171 605.9 384 78.6
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-170 603.6 404 75.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.4e-170 603.2 358 83.0
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.9e-170 602.8 355 83.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 7.1e-170 600.9 357 80.7
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 7.1e-170 600.9 359 81.9
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 9.3e-170 600.5 456 68.0
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.2e-169 600.1 399 74.9
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 4.6e-169 598.2 411 74.9
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 7.8e-169 597.4 353 82.7
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 3.9e-168 595.1 358 81.0
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.9e-168 595.1 407 73.0
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.9e-168 595.1 409 75.8
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.1e-167 593.6 357 81.5
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 3.3e-167 592.0 414 73.9
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 5.6e-167 591.3 351 82.6
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 5.6e-167 591.3 406 75.4
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.3e-166 590.1 358 81.3
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.1e-166 589.3 410 74.4
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.8e-166 589.0 354 80.8
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.8e-166 589.0 408 74.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.8e-166 589.0 407 74.0
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.1e-165 587.0 357 80.4
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 3.1e-165 585.5 390 75.9
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 3.1e-165 585.5 337 83.4
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.2e-162 575.5 327 83.8
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.2e-162 575.5 327 83.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.2e-162 575.5 359 78.8
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.6e-161 573.2 433 69.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.6e-161 573.2 352 76.7
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.0e-160 568.9 356 78.7
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.1e-160 568.2 441 67.3
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.7e-158 562.0 335 82.7
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.5e-156 556.6 332 81.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 5.5e-154 548.1 434 65.2
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 9.6e-151 537.3 354 71.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.6e-150 536.6 357 74.5
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.7e-147 526.6 357 73.4
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 7.1e-146 521.2 508 56.7
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.9e-143 513.1 407 67.6
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.5e-143 512.7 539 53.6
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.1e-135 487.3 485 56.1
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.2e-121 440.7 328 68.6
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.8e-117 426.8 434 56.0
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 4.1e-117 425.6 353 59.2
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 8.8e-112 407.9 209 91.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.8e-109 400.2 203 94.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 3.1e-109 399.4 382 52.9
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 6.5e-107 391.7 346 57.8
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 6.4e-78 295.4 292 50.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 8.4e-62 241.9 370 37.8
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 3.0e-59 233.4 114 95.6
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.8e-57 226.1 122 84.4
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.1e-49 200.7 181 61.9
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 6.7e-43 179.1 211 52.6
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 6.7e-43 179.1 111 80.2
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.4e-32 144.8 103 66.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.5e-31 141.4 68 92.6
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 6.1e-28 129.4 85 75.3
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.9e-28 129.0 75 84.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 8.7e-27 125.6 84 73.8
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 2.9e-22 110.5 80 66.2
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.8e-19 101.3 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 3.1e-16 90.5 43 95.3
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 3.8e-14 83.6 61 68.9
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.0e-11 75.5 70 62.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 3.9e-11 73.6 43 79.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.3e-08 63.2 54 55.6
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 1.5e-07 61.6 41 68.3


User provided reference genes

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