Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G121301 Phaseolus vulgaris HOM05D003902 ORTHO05D048967 2.1e-57 225.7 131 100.0
VMungo0331G0507 Vigna mungo HOM05D003902 ORTHO05D005866 1.5e-44 183.0 121 81.8
Phvul.003G017600 Phaseolus vulgaris HOM05D003902 ORTHO05D005866 1.1e-39 166.8 121 76.9
Lj3g0025959 Lotus japonicus HOM05D003902 ORTHO05D005866 2.6e-36 155.6 121 70.2
Glyma.16G016200 Glycine max HOM05D003902 ORTHO05D005866 4.8e-30 134.8 127 65.4
Actinidia28870 Actinidia chinensis HOM05D003902 ORTHO05D005866 1.1e-29 133.7 94 74.5
Cpa.g.c32082 Carica papaya HOM05D003902 ORTHO05D005866 9.0e-29 130.6 123 61.0
Gohir.A07G133200 Gossypium hirsutum HOM05D003902 ORTHO05D005866 9.0e-29 130.6 121 62.0
Gohir.D07G137700 Gossypium hirsutum HOM05D003902 ORTHO05D005866 9.0e-29 130.6 121 62.0
Gorai.001G149800 Gossypium raimondii HOM05D003902 ORTHO05D005866 9.0e-29 130.6 121 63.6
Nitab4.5_0001819g0080 Nicotiana tabacum HOM05D003902 ORTHO05D005866 2.6e-28 129.0 121 62.0
Duzib138G1363 Durio zibethinus HOM05D003902 ORTHO05D005866 4.5e-28 128.3 121 64.5
CiPaw.02G046000 Carya illinoinensis HOM05D003902 ORTHO05D005866 5.8e-28 127.9 129 62.0
Nitab4.5_0000329g0230 Nicotiana tabacum HOM05D003902 ORTHO05D005866 7.6e-28 127.5 121 61.2
Thecc.01G330300 Theobroma cacao HOM05D003902 ORTHO05D005866 1.3e-27 126.7 121 62.0
CsaV3_3G039450 Cucumis sativus L. HOM05D003902 ORTHO05D005866 2.2e-27 125.9 77 83.1
Cc09_g09110 Coffea canephora HOM05D003902 ORTHO05D005866 2.9e-27 125.6 124 62.1
QL02p054986 Quercus lobata HOM05D003902 ORTHO05D005866 3.8e-27 125.2 119 63.9
Duzib133G1020 Durio zibethinus HOM05D003902 ORTHO05D005866 4.9e-27 124.8 121 61.2
Potri.002G182600 Populus trichocarpa HOM05D003902 ORTHO05D005866 4.9e-27 124.8 125 59.2
Prupe.2G203400 Prunus persica HOM05D003902 ORTHO05D005866 4.9e-27 124.8 120 61.7
MD01G1095300 Malus domestica HOM05D003902 ORTHO05D005866 1.1e-26 123.6 123 61.8
Sabra02G0132600 Salix brachista HOM05D003902 ORTHO05D005866 1.4e-26 123.2 125 59.2
GSVIVG01022422001 Vitis vinifera HOM05D003902 ORTHO05D005866 1.4e-26 123.2 77 83.1
Lj9A609G66 Lonicera japonica HOM05D003902 ORTHO05D005866 1.9e-26 122.9 120 60.8
PGR042G3296 Punica granatum HOM05D003902 ORTHO05D005866 1.9e-26 122.9 121 61.2
vmacro11191 Vaccinium macrocarpon HOM05D003902 ORTHO05D005866 1.9e-26 122.9 129 57.4
MD07G1164400 Malus domestica HOM05D003902 ORTHO05D005866 2.4e-26 122.5 91 72.5
Nn068s42296 Nelumbo nucifera HOM05D003902 ORTHO05D005866 2.4e-26 122.5 121 62.0
Nn5g28264 Nelumbo nucifera HOM05D003902 ORTHO05D005866 2.4e-26 122.5 121 62.0
TWI09G0903 Tripterygium wilfordii HOM05D003902 ORTHO05D005866 2.4e-26 122.5 130 56.9
Ciclev10020807m.g Citrus clementina HOM05D003902 ORTHO05D005866 3.2e-26 122.1 122 57.4
MSTRG.9234 Avicennia marina HOM05D003902 ORTHO05D005866 4.2e-26 121.7 93 71.0
MD01G1097300 Malus domestica HOM05D003902 ORTHO05D005866 4.2e-26 121.7 92 71.7
Nn1g08916 Nelumbo nucifera HOM05D003902 ORTHO05D005866 4.2e-26 121.7 92 71.7
ClCG10G008700 Citrullus lanatus HOM05D003902 ORTHO05D005866 5.5e-26 121.3 77 80.5
AUR62023522 Chenopodium quinoa HOM05D003902 ORTHO05D005866 1.2e-25 120.2 121 58.7
Lsat_1_v5_gn_7_76501 Lactuca sativa HOM05D003902 ORTHO05D005866 1.2e-25 120.2 98 66.3
GSVIVG01023391001 Vitis vinifera HOM05D003902 ORTHO05D005866 1.2e-25 120.2 121 59.5
SGA_v2.0_scaffold16G07544 Striga asiatica HOM05D003902 ORTHO05D005866 2.1e-25 119.4 93 71.0
CAN.G546.26 Capsicum annuum HOM05D003902 ORTHO05D005866 2.7e-25 119.0 122 62.3
TAR374G1339 Trochodendron aralioides HOM05D003902 ORTHO05D005866 4.6e-25 118.2 105 64.8
Cc00_g05410 Coffea canephora HOM05D003902 ORTHO05D005866 6.0e-25 117.9 77 79.2
AUR62004576 Chenopodium quinoa HOM05D003902 ORTHO05D005866 1.0e-24 117.1 77 77.9
Haze_15766 Corylus avellana HOM05D003902 ORTHO05D005866 1.0e-24 117.1 77 79.2
Dinv32654 Davidia involucrata HOM05D003902 ORTHO05D005866 1.0e-24 117.1 123 58.5
Dinv40719 Davidia involucrata HOM05D003902 ORTHO05D005866 1.0e-24 117.1 123 58.5
Eucgr.A02139 Eucalyptus grandis HOM05D003902 ORTHO05D005866 1.3e-24 116.7 128 56.2
Rhsim01G0181600 Rhododendron simsii HOM05D003902 ORTHO05D005866 1.3e-24 116.7 133 55.6
Sopen11g026020 Solanum pennellii HOM05D003902 ORTHO05D005866 1.3e-24 116.7 122 56.6
SGA_v2.0_scaffold82G26257 Striga asiatica HOM05D003902 ORTHO05D005866 1.3e-24 116.7 93 69.9
Cfa003716 Carpinus fangiana HOM05D003902 ORTHO05D005866 1.8e-24 116.3 99 64.6
SalBow1G7347 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.8e-24 116.3 77 77.9
PGSC0003DMG400000409 Solanum tuberosum HOM05D003902 ORTHO05D005866 1.8e-24 116.3 122 56.6
MBI12_g05893_MAGBIO Magnolia biondii HOM05D003902 ORTHO05D005866 2.3e-24 115.9 121 56.2
FvH4_7g18100 Fragaria vesca HOM05D003902 ORTHO05D005866 3.0e-24 115.5 122 58.2
FAN06G3546 Fragaria x ananassa HOM05D003902 ORTHO05D005866 3.0e-24 115.5 122 58.2
FAN10G0112 Fragaria x ananassa HOM05D003902 ORTHO05D005866 3.9e-24 115.2 122 58.2
FAN10G1292 Fragaria x ananassa HOM05D003902 ORTHO05D005866 3.9e-24 115.2 122 58.2
EL10Ac1g00160 Beta vulgaris HOM05D003902 ORTHO05D005866 6.7e-24 114.4 129 51.2
FAN01G1310 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.1e-23 113.6 122 57.4
Oeu014509.1 Olea europaea HOM05D003902 ORTHO05D005866 1.1e-23 113.6 77 75.3
SalBow1G8176 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.1e-23 113.6 77 76.6
Migut.C00356 Erythranthe guttata HOM05D003902 ORTHO05D005866 1.5e-23 113.2 77 76.6
HanXRQChr07g0187351 Helianthus annuus HOM05D003902 ORTHO05D005866 1.5e-23 113.2 90 68.9
arahy.Tifrunner.gnm1.ann1.GE61F7 Arachis hypogaea HOM05D003902 ORTHO05D005866 1.9e-23 112.8 77 79.2
FAN03G2357 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.9e-23 112.8 122 57.4
FAN03G3101 Fragaria x ananassa HOM05D000028 ORTHO05D001812 1.9e-23 112.8 122 57.4
CANSAT80G0986 Cannabis sativa HOM05D003902 ORTHO05D005866 3.3e-23 112.1 119 58.0
Sed0016671 Sechium edule HOM05D003902 ORTHO05D005866 3.3e-23 112.1 77 74.0
unitig_747.g21998 Utricularia gibba HOM05D003902 ORTHO05D005866 3.3e-23 112.1 90 66.7
AT4G01560 Arabidopsis thaliana HOM05D003902 ORTHO05D005866 5.6e-23 111.3 119 53.8
RcHm_v2.0_Chr1g0361751 Rosa chinensis HOM05D003902 ORTHO05D005866 7.4e-23 110.9 122 56.6
Medtr8g023820 Medicago truncatula HOM05D003902 ORTHO05D005866 1.3e-22 110.2 121 54.5
Thhalv10028775m.g Eutrema salsugineum HOM05D003902 ORTHO05D005866 1.6e-22 109.8 119 52.9
Solyc11g066280.3 Solanum lycopersicum HOM05D003902 ORTHO05D005866 2.1e-22 109.4 77 74.0
Glyma.07G047700 Glycine max HOM05D003902 ORTHO05D005866 2.8e-22 109.0 127 55.9
arahy.Tifrunner.gnm1.ann1.EQY875 Arachis hypogaea HOM05D003902 ORTHO05D005866 3.7e-22 108.6 116 56.9
THA.LOC104825915 Tarenaya hassleriana HOM05D003902 ORTHO05D005866 3.7e-22 108.6 121 51.2
ATR0315G125 Amborella trichopoda HOM05D003902 ORTHO05D005866 4.8e-22 108.2 121 53.7
Peaxi162Scf00086g01414 Petunia axillaris HOM05D003902 ORTHO05D005866 1.4e-21 106.7 116 57.8
Sabra14G0079900 Salix brachista HOM05D003902 ORTHO05D005866 2.4e-21 105.9 135 50.4
Manes.07G093900 Manihot esculenta HOM05D003902 ORTHO05D005866 4.0e-21 105.1 131 50.4
BcaB01g02136 Brassica carinata HOM05D003902 ORTHO05D005866 5.3e-21 104.8 119 49.6
BolC9t53054H Brassica oleracea HOM05D003902 ORTHO05D005866 5.3e-21 104.8 119 50.4
A09p01120 Brassica napus HOM05D003902 ORTHO05D005866 6.9e-21 104.4 119 50.4
SEGI_13893 Sequoiadendron giganteum HOM05D003902 ORTHO05D005866 6.9e-21 104.4 124 55.6
CARHR250110 Cardamine hirsuta HOM05D003902 ORTHO05D005866 9.0e-21 104.0 123 51.2
Potri.014G108400 Populus trichocarpa HOM05D003902 ORTHO05D005866 9.0e-21 104.0 85 68.2
PSO339G4022 Papaver somniferum HOM05D003902 ORTHO05D005866 1.5e-20 103.2 121 49.6
PSO384G4956 Papaver somniferum HOM05D003902 ORTHO05D005866 1.5e-20 103.2 121 49.6
BcaC04g24086 Brassica carinata HOM05D003902 ORTHO05D005866 2.0e-20 102.8 119 49.6
C09p01200 Brassica napus HOM05D003902 ORTHO05D005866 2.0e-20 102.8 119 49.6
FAN06G2806 Fragaria x ananassa HOM05D003902 ORTHO05D005866 2.0e-20 102.8 69 75.4
BraA09t35783Z Brassica rapa HOM05D003902 ORTHO05D005866 2.6e-20 102.4 119 49.6
ClCG10G016910 Citrullus lanatus HOM05D003902 ORTHO05D005866 2.6e-20 102.4 77 70.1
MELO3C009689.2 Cucumis melo HOM05D003902 ORTHO05D005866 2.6e-20 102.4 77 70.1
Sp6g01470 Schrenkiella parvula HOM05D003902 ORTHO05D005866 2.6e-20 102.4 119 50.4
Aa31LG5G1280 Aethionema arabicum HOM05D003902 ORTHO05D005866 3.4e-20 102.1 125 52.0
HPP92_016601 Vanilla planifolia HOM05D003902 ORTHO05D005866 3.4e-20 102.1 121 52.1
Os06g0137500 Oryza sativa ssp. japonica HOM05D003902 ORTHO05D005866 4.5e-20 101.7 125 48.0
AL6G51780 Arabidopsis lyrata HOM05D003902 ORTHO05D005866 5.8e-20 101.3 119 50.4
Lalb_Chr10g0100971 Lupinus albus HOM05D003902 ORTHO05D005866 1.0e-19 100.5 121 52.1
Psat4g164400 Pisum sativum HOM05D003902 ORTHO05D005866 1.7e-19 99.8 121 54.5
Zm00001eb356330 Zea mays HOM05D003902 ORTHO05D005866 6.5e-19 97.8 122 49.2
Carub.0006s3564 Capsella rubella HOM05D003902 ORTHO05D005866 1.1e-18 97.1 119 49.6
BcaB01g02370 Brassica carinata HOM05D003902 ORTHO05D005866 1.4e-18 96.7 77 63.6
ECA236G3056 Erigeron canadensis HOM05D003902 ORTHO05D005866 7.1e-18 94.4 123 49.6
FvH4_7g18130 Fragaria vesca HOM05D003902 ORTHO05D005866 2.1e-17 92.8 70 71.4
CSS0017733 Camellia sinensis var. sinensis HOM05D003902 ORTHO05D005866 2.3e-16 89.4 128 46.9
Sc01g0002090 Simmondsia chinensis HOM05D003902 ORTHO05D005866 2.3e-16 89.4 121 48.8
Aqoxy2G01409 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 3.0e-16 89.0 121 47.9
Aqoxy4G02970 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 3.0e-16 89.0 121 47.9
Ca_23480_v3 Cicer arietinum L. HOM05D003902 ORTHO05D005866 8.7e-16 87.4 121 51.2
TAR375G0943 Trochodendron aralioides HOM05D003902 ORTHO05D005866 9.0e-13 77.4 63 65.1
Mapoly0132s0039 Marchantia polymorpha HOM05D003902 ORTHO05D005866 4.5e-12 75.1 119 46.2
SMO244G0063 Selaginella moellendorffii HOM05D003902 ORTHO05D005866 1.3e-11 73.6 119 43.7
Pp3c1_10040 Physcomitrium patens HOM05D003902 ORTHO05D005866 1.1e-10 70.5 124 40.3
COL.COLO4_23075 Corchorus olitorius HOM05D003902 ORTHO05D005866 3.2e-10 68.9 42 81.0
Medtr1g054855 Medicago truncatula HOM05D003902 ORTHO05D048967 3.2e-10 68.9 50 70.0
TPR.G32793 Trifolium pratense HOM05D003902 ORTHO05D005866 4.2e-10 68.6 121 42.1
Medtr1g087510 Medicago truncatula HOM05D003902 ORTHO05D262154 1.1e-07 60.5 78 47.4
Lalb_Chr04g0254031 Lupinus albus HOM05D003902 ORTHO05D238490 4.3e-07 58.5 82 48.8
DCAR_024001 Daucus carota HOM05D003902 ORTHO05D005866 1.3e-06 57.0 121 40.5
BcaB04g19572 Brassica carinata HOM05D003902 ORTHO05D027527 1.6e-06 56.6 39 61.5
BcaB07g29875 Brassica carinata HOM05D003902 ORTHO05D027527 1.6e-06 56.6 39 61.5
CDE04G0523 Ceratophyllum demersum HOM05D003902 ORTHO05D005866 2.8e-06 55.8 28 89.3
Lalb_Chr04g0254041 Lupinus albus HOM05D003902 ORTHO05D005866 8.2e-06 54.3 27 85.2


User provided reference genes

Program Settings