Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.6e-123 446.0 216 100.0
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.6e-123 446.0 216 100.0
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.4e-116 422.9 216 94.4
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 4.5e-102 374.8 212 84.9
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.7e-101 372.9 191 94.8
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 2.0e-97 359.4 212 82.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 4.7e-83 311.6 215 68.8
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.8e-79 299.7 208 72.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.1e-79 298.5 207 68.6
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.2e-78 297.0 208 70.2
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-72 276.9 207 66.2
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.9e-72 275.8 205 64.9
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 5.4e-71 271.6 209 63.2
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.7e-69 266.5 205 64.9
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 3.0e-69 265.8 199 63.3
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 3.9e-69 265.4 209 60.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 3.9e-69 265.4 207 63.3
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 6.6e-69 264.6 224 60.3
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.9e-68 263.1 223 61.0
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.5e-68 260.8 215 59.5
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.8e-67 259.2 205 64.4
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 4.7e-67 258.5 216 61.1
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 8.0e-67 257.7 224 58.5
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.0e-66 257.3 205 62.9
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.0e-66 257.3 224 58.5
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.4e-66 256.9 224 58.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.3e-66 256.1 222 59.9
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 6.8e-66 254.6 205 58.5
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.2e-65 253.8 205 62.0
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-65 253.8 215 57.7
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.5e-65 253.4 205 58.0
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.6e-65 252.7 212 58.5
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.6e-65 252.7 222 59.0
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 6.4e-64 248.1 214 56.5
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.1e-63 247.3 226 57.1
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.4e-63 246.1 206 61.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.2e-63 245.7 205 59.0
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.2e-63 245.7 205 55.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 3.2e-63 245.7 248 52.8
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 7.0e-63 244.6 215 57.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.0e-62 243.0 205 58.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 4.6e-62 241.9 236 53.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 4.6e-62 241.9 221 56.1
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 2.3e-61 239.6 216 56.9
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 6.6e-61 238.0 215 55.3
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 8.6e-61 237.7 217 57.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.1e-60 237.3 217 51.6
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.1e-60 237.3 215 56.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.9e-60 236.5 238 52.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.5e-60 236.1 211 56.9
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 4.3e-60 235.3 232 54.3
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 5.6e-60 235.0 205 56.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 7.3e-60 234.6 218 52.3
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.3e-60 234.6 205 55.1
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.3e-60 234.6 205 54.6
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 7.3e-60 234.6 205 55.6
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.6e-59 233.4 215 56.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.1e-59 233.0 205 54.6
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.1e-59 233.0 206 53.9
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.2e-59 231.5 217 53.5
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.1e-58 230.7 205 52.2
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.4e-58 230.3 239 53.6
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.4e-58 230.3 239 53.6
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 6.8e-58 228.0 216 51.9
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 8.9e-58 227.6 223 51.6
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 8.9e-58 227.6 207 51.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.2e-57 227.3 206 54.4
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.5e-57 226.9 207 52.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.6e-57 226.1 224 54.9
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 3.4e-57 225.7 217 51.6
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 3.4e-57 225.7 217 51.6
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 4.4e-57 225.3 216 52.3
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.8e-57 224.9 205 53.7
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 5.8e-57 224.9 245 51.0
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 2.9e-56 222.6 212 55.2
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.1e-55 220.7 190 56.8
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.1e-55 220.7 251 49.0
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.4e-55 220.3 168 66.1
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-55 219.9 218 50.9
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.9e-55 219.9 206 56.8
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.9e-55 219.9 206 56.3
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 5.4e-55 218.4 206 52.9
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.1e-55 218.0 191 59.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.1e-54 216.5 205 49.8
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.7e-54 216.1 204 56.9
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 4.6e-54 215.3 235 48.9
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.3e-53 213.8 187 57.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.3e-53 213.8 207 50.2
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.7e-53 213.4 197 56.9
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.1e-52 210.7 217 50.7
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.5e-52 209.5 247 44.9
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.6e-52 208.4 192 54.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 5.6e-52 208.4 190 56.3
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 5.6e-52 208.4 205 45.9
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.2e-51 207.2 205 50.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.1e-51 206.5 205 49.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.6e-51 205.7 215 44.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 2.3e-50 203.0 195 48.7
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 2.2e-48 196.4 215 46.5
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.2e-48 196.4 205 49.3
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 8.4e-48 194.5 191 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.1e-47 194.1 205 41.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 4.1e-47 192.2 206 43.7
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.2e-46 190.7 205 50.7
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 5.1e-45 185.3 273 39.6
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 5.6e-44 181.8 183 54.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.7e-40 170.2 175 51.4
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.1e-39 167.5 135 65.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.2e-39 166.0 206 42.2
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 9.3e-39 164.5 96 82.3
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 6.6e-37 158.3 132 51.5
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 8.7e-37 157.9 135 60.7
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.7e-37 157.9 104 76.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 5.6e-36 155.2 217 35.9
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.6e-35 152.5 205 42.9
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.4e-34 150.6 111 61.3
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.4e-33 146.0 217 35.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 7.6e-33 144.8 123 56.9
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.9e-32 142.9 153 51.0
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 4.2e-31 139.0 116 56.9
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 5.1e-29 132.1 199 37.7
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-28 131.0 98 65.3
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.1e-28 131.0 140 47.1
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.3e-28 129.0 101 65.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.1e-26 124.4 98 60.2
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 2.0e-25 120.2 145 46.9
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.9e-23 113.6 98 63.3
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 3.2e-23 112.8 92 54.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.6e-22 110.5 68 80.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.3e-21 107.5 70 72.9
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-19 100.1 100 57.0
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.2e-19 98.6 75 69.3
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-18 97.8 63 73.0
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.1e-18 96.3 115 45.2
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 5.3e-18 95.5 113 39.8
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.3e-18 95.5 68 61.8
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.9e-16 89.7 64 56.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.4e-15 87.4 70 58.6
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.0e-13 81.3 46 73.9
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 6.7e-13 78.6 109 43.1
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 8.7e-13 78.2 61 57.4
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 8.7e-13 78.2 118 39.0
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.1e-10 71.2 48 62.5
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 2.4e-10 70.1 42 71.4
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 4.5e-09 65.9 50 54.0
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 3.8e-08 62.8 45 53.3
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.8e-08 62.8 56 51.8
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 2.5e-07 60.1 41 63.4
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 3.2e-07 59.7 41 63.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 4.2e-07 59.3 34 67.6
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.2e-07 59.3 39 71.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 5.5e-07 58.9 162 27.2
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-06 57.8 48 52.1
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 7.9e-06 55.1 47 48.9


User provided reference genes

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