Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 0.0e+00 1408.3 752 100.0
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 0.0e+00 1289.2 754 89.7
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 0.0e+00 1203.7 758 83.5
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 2.0e-290 1002.3 757 72.8
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.7e-289 999.2 762 70.9
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 2.9e-281 971.8 691 74.7
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.5e-277 959.5 752 69.9
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 7.7e-274 947.2 781 67.9
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 3.1e-267 925.2 713 69.4
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 1.6e-258 896.3 704 69.3
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 1.1e-232 810.4 727 59.4
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 7.3e-232 807.7 727 59.3
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.8e-231 805.8 791 55.1
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 7.5e-221 771.2 759 55.1
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 5.4e-219 765.0 726 55.2
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 2.7e-218 762.7 776 54.1
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.7e-217 760.0 616 61.7
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.3e-216 755.7 785 52.7
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.2e-215 753.8 728 54.4
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.2e-215 753.8 710 55.8
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 3.6e-215 752.3 662 57.9
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.3e-214 749.6 785 52.5
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 8.9e-214 747.7 915 48.1
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 8.9e-214 747.7 757 53.6
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 4.9e-212 741.9 641 59.6
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.4e-211 740.3 653 58.0
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 1.0e-209 734.2 727 54.5
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 5.1e-209 731.9 698 56.0
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 8.6e-209 731.1 768 53.0
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 5.6e-208 728.4 817 49.9
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 7.3e-208 728.0 674 56.1
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 9.5e-208 727.6 674 56.1
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 8.1e-207 724.5 637 57.3
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 8.1e-207 724.5 702 54.7
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.1e-206 724.2 731 52.5
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.4e-206 723.8 674 56.2
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 8.9e-206 721.1 614 59.6
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.5e-205 720.3 699 54.6
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.0e-205 719.9 721 53.8
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.6e-205 718.0 768 52.5
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.2e-204 716.5 768 52.2
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 2.9e-204 716.1 780 51.3
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 6.4e-204 714.9 642 57.3
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 2.1e-202 709.9 725 53.4
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 8.7e-201 704.5 787 50.6
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.4e-198 697.2 764 51.0
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 3.1e-198 696.0 719 51.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 6.9e-198 694.9 699 52.8
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 9.0e-198 694.5 694 52.0
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.5e-197 693.7 719 51.7
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.5e-197 693.7 620 57.6
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 3.4e-197 692.6 610 56.2
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.3e-196 690.6 718 50.8
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 4.9e-196 688.7 639 56.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 3.2e-195 686.0 721 52.3
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 4.2e-195 685.6 721 51.2
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 5.4e-195 685.3 707 50.8
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.0e-193 681.0 720 51.4
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 1.1e-192 677.6 613 55.5
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 1.5e-192 677.2 791 47.5
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 1.5e-192 677.2 641 54.3
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.5e-192 676.4 719 51.2
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 4.3e-192 675.6 696 51.1
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 7.3e-192 674.9 718 51.1
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 9.6e-192 674.5 707 51.2
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.3e-191 674.1 766 49.9
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.6e-191 673.7 611 55.3
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 2.1e-191 673.3 771 49.8
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.6e-191 672.5 781 46.9
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.2e-189 667.5 740 49.3
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 3.4e-189 666.0 698 50.9
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 9.9e-189 664.5 698 49.7
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.3e-188 664.1 643 53.8
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.7e-188 663.7 1117 38.9
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 4.9e-188 662.1 722 49.4
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 2.4e-187 659.8 699 49.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 3.2e-187 659.4 699 49.6
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.2e-186 657.5 689 50.2
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 1.8e-185 653.7 699 49.6
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 6.7e-185 651.7 695 48.5
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 2.8e-183 646.4 637 50.9
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 4.8e-183 645.6 775 48.0
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.2e-181 641.0 643 51.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 5.8e-181 638.6 776 46.9
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 3.8e-180 636.0 695 48.6
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 8.4e-180 634.8 682 51.5
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.3e-175 620.9 644 51.2
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.1e-171 607.8 746 45.4
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.9e-171 607.1 624 52.9
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 7.1e-171 605.1 595 53.4
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 3.5e-170 602.8 653 49.0
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 5.7e-168 595.5 721 46.3
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.6e-167 594.0 608 51.3
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 2.4e-158 563.5 648 48.9
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.1e-154 550.4 622 45.7
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.7e-151 539.7 672 43.3
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-149 534.3 642 46.4
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 5.0e-148 529.3 406 68.7
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.8e-135 486.9 479 52.6
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.2e-128 464.9 631 42.9
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 5.8e-112 409.5 332 62.7
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 4.6e-101 373.2 724 34.9
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 9.5e-99 365.5 576 38.2
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 3.4e-96 357.1 299 59.9
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 8.3e-95 352.4 586 37.5
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 2.7e-93 347.4 715 33.6
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 6.4e-87 326.2 570 35.3
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.7e-79 301.6 688 33.4
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 9.6e-75 285.8 325 45.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.1e-66 258.1 642 31.2
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 2.6e-64 251.1 244 55.3
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.5e-59 235.3 172 83.1
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.0e-55 220.3 235 47.2
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 7.4e-51 206.5 593 28.0
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 3.3e-43 181.0 667 24.0
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 2.8e-42 177.9 635 25.5
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.0e-40 171.8 610 26.9
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 7.0e-33 146.7 156 47.4
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 8.8e-28 129.8 532 26.1
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.0e-24 118.6 257 32.7
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.6e-24 118.2 145 46.2
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.6e-21 107.8 169 40.2
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.0e-15 89.7 72 62.5
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.0e-15 89.7 83 54.2
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 4.2e-14 84.3 92 46.7
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-13 82.8 151 37.1
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 6.1e-13 80.5 148 35.8
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 2.0e-11 75.5 547 21.6
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 3.4e-11 74.7 122 36.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 9.8e-11 73.2 153 34.0
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.8e-07 61.2 59 49.2


User provided reference genes

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