Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 0.0e+00 1119.0 568 100.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 0.0e+00 1095.5 568 96.8
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.3e-310 1068.9 568 94.2
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 8.0e-308 1059.7 568 94.4
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 4.4e-290 1000.7 572 90.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.4e-288 993.8 569 88.6
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 8.6e-286 986.5 571 89.3
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.7e-281 972.2 582 86.9
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 3.7e-281 971.1 582 86.8
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 4.9e-281 970.7 569 87.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 8.1e-276 953.4 570 86.5
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.4e-274 947.6 567 85.2
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.3e-269 931.0 572 83.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.6e-268 929.1 575 83.5
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.2e-266 922.9 569 83.8
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.2e-266 922.9 568 82.9
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.1e-264 916.4 567 82.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.4e-264 916.0 566 83.0
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.8e-263 910.2 566 83.7
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.1e-261 906.4 547 85.2
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.9e-261 905.6 567 82.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.6e-260 902.5 567 82.4
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.1e-259 899.8 587 80.2
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 5.3e-259 897.5 567 82.0
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 9.0e-259 896.7 571 82.0
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.4e-258 894.8 567 81.5
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.8e-258 894.0 568 80.5
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.4e-256 889.4 569 80.0
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.4e-256 887.5 567 81.1
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.1e-255 885.6 582 81.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 6.0e-255 884.0 569 82.4
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.3e-254 882.1 572 79.7
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.0e-254 881.7 569 79.3
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.3e-253 878.2 569 80.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 4.3e-253 877.9 569 79.3
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-252 875.2 575 79.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 8.1e-252 873.6 571 79.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.4e-251 872.8 578 78.9
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 5.3e-251 870.9 567 79.0
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 6.9e-251 870.5 573 80.1
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.2e-250 869.8 569 78.6
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.5e-250 869.4 572 79.2
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.6e-250 868.6 568 79.4
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.5e-250 867.8 566 79.0
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.4e-248 862.1 570 77.9
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.1e-247 859.0 577 78.5
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.8e-246 855.9 588 77.2
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 6.7e-246 854.0 568 77.6
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 3.3e-245 851.7 569 77.0
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 4.8e-244 847.8 570 75.6
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.8e-244 847.8 571 76.9
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.1e-243 846.7 567 78.5
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.8e-243 845.9 571 76.7
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.4e-243 845.5 571 76.7
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.3e-243 844.3 571 76.4
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-242 843.2 568 77.6
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.3e-241 839.7 565 76.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.7e-241 839.3 568 77.3
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.7e-241 839.3 571 78.6
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.9e-241 838.6 574 78.4
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 4.2e-240 834.7 671 68.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.6e-239 832.8 522 82.0
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.6e-239 831.2 598 73.2
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.3e-238 828.9 571 75.5
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.9e-238 828.2 568 76.8
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.5e-237 826.2 572 76.7
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 5.7e-237 824.3 569 76.3
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.7e-236 821.6 527 80.3
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.4e-235 818.9 569 75.9
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 6.9e-235 817.4 569 75.7
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 3.8e-233 811.6 570 75.1
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.4e-230 803.1 518 81.1
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.1e-230 801.2 569 72.8
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 9.7e-229 797.0 573 73.6
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 9.7e-229 797.0 631 68.1
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-224 782.7 579 72.0
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.2e-224 781.9 564 73.0
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-222 776.9 558 73.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.3e-222 775.8 589 70.6
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 3.9e-222 775.0 552 74.5
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 8.8e-222 773.9 561 73.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 8.2e-220 767.3 564 71.6
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.2e-218 763.5 568 71.0
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 4.5e-218 761.5 565 72.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.2e-217 759.2 564 71.1
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.4e-216 756.5 593 67.1
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.9e-216 756.1 569 71.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.2e-216 755.4 556 71.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 4.7e-215 751.5 734 58.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 8.0e-215 750.7 505 75.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.0e-214 750.4 587 69.8
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.4e-214 750.0 567 69.8
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.4e-214 750.0 567 69.8
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.4e-214 750.0 567 69.8
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 5.2e-214 748.0 565 71.3
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 3.3e-213 745.3 584 70.2
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.2e-212 742.7 567 69.1
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 8.2e-212 740.7 567 69.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.4e-211 739.2 564 69.3
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-211 738.8 579 67.2
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.0e-206 723.8 550 69.8
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 2.2e-204 716.1 571 70.1
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 4.1e-203 711.8 547 68.9
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 7.7e-202 707.6 418 85.6
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.6e-197 692.6 566 66.3
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.2e-196 689.5 574 67.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.4e-195 686.8 568 66.9
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 5.7e-189 664.8 486 71.8
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 9.8e-173 610.9 593 60.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 4.4e-157 558.9 384 76.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-144 515.8 500 57.2
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-144 515.8 500 57.2
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-144 515.8 500 57.2
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.9e-140 503.1 603 50.1
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.2e-133 481.1 595 50.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.2e-127 458.4 262 85.1
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 3.8e-124 449.5 479 55.5
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.9e-123 447.2 351 67.2
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 6.8e-89 332.4 259 68.7
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 5.5e-83 312.8 161 95.0
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-82 310.8 198 79.3
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 2.3e-81 307.4 238 69.7
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.0e-81 307.0 553 41.6
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 2.8e-79 300.4 357 52.7
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.7e-76 291.2 332 54.5
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.6e-74 283.5 163 85.3
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-73 280.0 271 57.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.4e-70 271.6 160 88.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.2e-70 270.4 194 72.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 3.4e-64 250.4 415 42.2
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 1.6e-61 241.5 169 76.9
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 9.8e-56 222.2 190 63.2
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.8e-53 212.6 421 41.1
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.4e-49 201.8 134 73.9
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-42 178.7 178 59.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 6.2e-42 176.4 118 81.4
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-41 175.6 117 78.6
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.6e-40 171.0 607 30.5
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-35 155.6 157 59.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-35 155.6 148 57.4
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.7e-28 131.7 77 84.4
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-25 120.6 113 57.5
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 3.4e-24 117.5 58 96.6
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.8e-24 116.7 78 73.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.7e-20 103.2 123 48.8
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.7e-18 97.4 66 80.3
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.8e-18 97.1 69 75.4
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 4.8e-18 97.1 182 34.6
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 6.2e-18 96.7 59 69.5
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 9.0e-17 92.8 137 40.1
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.2e-16 92.4 68 72.1
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 2.5e-14 84.7 86 50.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-13 82.0 87 48.3
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.6e-13 80.5 57 80.7
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 7.4e-11 73.2 49 81.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.0e-08 65.1 64 64.1
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.9e-07 61.2 68 45.6
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.8e-07 60.8 36 83.3
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.4e-06 58.9 53 50.9


User provided reference genes

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