Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1144.0 563 100.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1131.3 563 98.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1124.0 562 97.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1113.6 561 97.0
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1104.0 560 96.2
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1101.7 559 96.1
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 560 95.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1097.4 560 95.5
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 560 95.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1095.5 560 95.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 561 95.2
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 559 95.3
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 558 95.0
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 554 95.5
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 558 95.0
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 560 94.6
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 562 94.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 554 95.1
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 558 94.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 559 94.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 559 94.1
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 556 94.1
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 560 94.3
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 559 93.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 561 92.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 555 93.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 559 93.7
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 560 93.6
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 554 94.4
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 559 93.2
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 556 93.7
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 559 93.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 556 93.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 582 91.2
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 559 93.2
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 558 93.4
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 560 93.8
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 560 93.8
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 559 93.6
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 556 93.2
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 559 93.2
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 560 92.3
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 559 93.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 561 92.9
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 559 93.4
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 559 93.2
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 559 93.4
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 556 93.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 561 92.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 560 92.3
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 555 93.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 559 92.7
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 560 92.1
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 556 93.0
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 556 92.3
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.4e-309 1065.4 556 92.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.4e-309 1065.4 560 92.3
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 560 92.0
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 2.5e-309 1064.7 556 92.6
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 556 92.3
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 5.5e-309 1063.5 556 92.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 588 88.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 556 91.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 9.4e-309 1062.8 556 91.7
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 556 91.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 556 91.5
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.7e-308 1061.2 555 91.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 559 92.1
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 560 91.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 560 91.6
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 5.1e-307 1057.0 562 92.2
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 6.7e-307 1056.6 556 91.0
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 6.7e-307 1056.6 556 91.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.7e-307 1056.6 557 91.7
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 6.7e-307 1056.6 596 88.1
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.5e-306 1055.4 560 91.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 5.7e-306 1053.5 561 90.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 4.1e-304 1047.3 614 84.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 4.5e-303 1043.9 554 91.3
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-303 1043.1 559 91.2
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.4e-301 1038.9 590 86.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 554 91.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 4.2e-301 1037.3 552 91.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 4.2e-301 1037.3 554 90.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 7.2e-301 1036.6 559 88.9
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 6.1e-300 1033.5 555 89.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.3e-299 1031.6 560 90.2
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 7.4e-298 1026.5 522 95.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.4e-296 1022.3 562 87.4
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 569 88.0
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.7e-291 1003.4 561 86.5
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-290 1002.3 557 86.5
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-290 1002.3 557 86.5
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.1e-288 996.1 558 88.0
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 8.0e-284 979.9 522 90.6
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.2e-274 949.5 487 93.8
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.0e-274 948.7 495 93.5
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 2.0e-263 912.1 556 81.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.5e-263 911.4 455 95.4
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 7.8e-263 910.2 540 80.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.9e-248 862.4 544 77.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.4e-235 819.7 560 74.6
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.9e-233 812.0 420 94.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 3.2e-232 808.5 406 95.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 9.3e-232 807.0 562 74.9
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.5e-229 798.9 528 78.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.3e-229 797.3 522 78.4
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-227 792.7 522 78.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.1e-220 769.2 560 71.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.0e-219 765.0 506 74.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.0e-218 762.7 559 71.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.3e-214 750.0 561 70.8
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 4.8e-212 741.5 386 93.0
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.5e-210 734.9 553 68.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.8e-193 678.7 502 70.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 4.1e-187 658.7 330 94.5
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 5.5e-168 595.1 312 90.1
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.3e-156 557.4 506 60.5
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.6e-149 533.1 552 56.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.6e-146 522.3 262 94.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.8e-138 495.0 462 58.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.4e-131 474.2 296 80.4
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.9e-128 463.8 255 89.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.3e-128 461.8 504 53.0
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.1e-127 460.3 385 64.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 8.1e-127 458.4 287 79.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.4e-126 457.6 559 50.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.0e-121 441.4 559 48.5
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-121 440.7 373 61.4
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.1e-114 417.2 234 89.3
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.1e-111 407.1 350 62.0
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.4e-107 394.4 196 95.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 5.5e-99 365.9 246 76.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.3e-96 356.7 267 68.5
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-94 351.3 214 79.9
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-93 347.1 289 66.1
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.3e-91 338.6 167 95.8
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-90 337.0 183 86.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 6.3e-87 325.9 310 60.0
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.2e-84 317.4 160 93.8
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 5.5e-83 312.8 154 94.2
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 6.1e-82 309.3 157 93.6
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.3e-71 275.0 173 82.1
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 7.0e-70 269.2 150 87.3
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.1e-62 243.4 152 80.3
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-53 214.2 123 87.0
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 4.0e-49 200.3 141 73.0
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-47 195.3 105 88.6
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-44 184.5 134 70.1
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-44 183.3 113 81.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 3.6e-42 177.2 279 42.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 2.3e-33 147.9 98 77.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 4.1e-30 137.1 140 56.4
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-27 127.5 75 84.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 9.5e-27 125.9 73 87.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 7.5e-24 116.3 79 77.2
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-16 91.7 63 71.4
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.4e-16 90.5 55 81.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-15 88.2 47 89.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-15 88.2 44 88.6
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.4e-14 84.7 49 81.6
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-14 84.7 59 71.2
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 7.1e-14 83.2 88 59.1
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 6.0e-13 80.1 49 83.7
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 6.0e-13 80.1 49 83.7
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 4.4e-08 63.9 40 82.5


User provided reference genes

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