Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.9e-214 748.8 355 100.0
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 5.3e-201 704.1 348 94.8
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 3.2e-198 694.9 348 92.8
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.0e-183 646.7 349 86.0
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 2.5e-182 642.1 344 84.3
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.2e-181 639.8 344 84.0
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.1e-181 639.0 344 83.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 5.2e-180 634.4 346 84.7
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.8e-177 625.9 344 82.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 5.4e-177 624.4 343 81.6
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.6e-171 605.5 348 78.4
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 5.8e-171 604.4 339 80.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 7.5e-171 604.0 338 80.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 7.5e-171 604.0 339 80.5
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 3.2e-169 598.6 339 78.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 5.6e-166 587.8 346 77.5
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 8.9e-164 580.5 335 77.6
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.0e-163 579.3 339 78.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.6e-163 578.9 339 77.0
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.7e-162 576.2 338 77.2
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.1e-161 573.5 339 74.9
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.4e-161 573.2 354 73.4
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.4e-161 573.2 344 73.5
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.4e-161 571.2 339 74.3
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 2.1e-160 569.3 337 76.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.7e-160 568.9 344 74.4
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 4.6e-160 568.2 339 75.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 6.0e-160 567.8 346 73.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.3e-159 566.6 339 73.7
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 8.6e-159 563.9 346 73.4
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 8.6e-159 563.9 346 73.1
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 8.6e-159 563.9 339 74.3
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.1e-158 563.5 343 73.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 2.5e-158 562.4 340 74.4
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.3e-158 562.0 340 74.4
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.2e-157 560.1 344 75.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-157 559.3 375 69.9
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.1e-157 559.3 344 73.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 2.8e-157 558.9 337 75.1
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 8.1e-157 557.4 346 73.4
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.1e-156 555.4 346 73.1
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.1e-156 555.4 339 75.2
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.5e-155 553.1 339 73.7
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.4e-155 552.0 337 72.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.3e-154 550.1 339 75.2
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 3.7e-154 548.5 346 72.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.9e-154 548.1 346 72.3
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-154 547.7 339 73.2
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 6.4e-154 547.7 338 72.8
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 2.4e-153 545.8 391 64.7
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 4.1e-153 545.0 342 71.3
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 1.2e-152 543.5 346 71.4
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.7e-152 542.3 342 70.8
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 7.8e-152 540.8 339 71.7
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.7e-151 539.7 343 72.0
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.7e-151 539.7 342 72.2
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 3.9e-151 538.5 342 72.5
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 6.6e-151 537.7 342 70.8
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-150 536.6 342 70.5
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.5e-150 535.8 342 72.2
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 2.5e-150 535.8 343 70.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 9.5e-150 533.9 339 71.7
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-149 533.5 343 70.3
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.2e-149 533.5 343 70.0
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-149 533.1 343 70.3
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.6e-149 533.1 343 70.3
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.6e-149 533.1 343 70.3
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 6.2e-149 531.2 339 69.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.2e-149 531.2 343 69.7
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 1.8e-148 529.6 341 70.4
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 6.8e-148 527.7 343 69.7
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 6.8e-148 527.7 340 70.6
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-147 526.9 343 70.0
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.2e-147 526.9 343 69.1
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-147 526.6 344 70.6
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.0e-147 526.2 339 69.6
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 4.4e-147 525.0 345 68.1
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 7.6e-147 524.2 349 69.9
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.7e-146 523.1 343 69.4
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.2e-146 522.7 346 67.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.9e-146 521.5 299 77.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.9e-145 519.6 347 67.1
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 3.5e-144 515.4 348 68.7
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.5e-144 515.4 348 68.7
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.5e-144 515.4 336 70.2
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.5e-142 510.0 340 69.4
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 7.3e-142 507.7 337 68.2
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.4e-139 498.8 334 70.1
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 9.9e-139 497.3 338 63.6
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.1e-137 493.8 353 66.0
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 3.0e-135 485.7 336 65.5
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 7.9e-128 461.1 348 60.6
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.0e-127 460.7 303 69.6
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-127 459.9 298 69.5
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.0e-127 459.1 342 62.9
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.4e-124 450.3 294 69.0
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-123 447.2 326 65.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-121 438.7 339 62.5
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.6e-120 436.8 345 61.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 3.0e-119 432.6 342 59.4
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 7.4e-118 427.9 353 58.4
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-116 424.1 324 62.0
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.8e-115 418.3 338 58.0
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.6e-115 417.9 342 57.9
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 8.4e-114 414.5 287 65.5
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.7e-112 409.5 287 65.2
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 3.0e-111 406.0 372 53.2
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 3.3e-110 402.5 290 64.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.1e-108 397.5 246 71.5
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-108 397.1 247 72.1
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.1e-104 383.3 264 70.1
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.0e-103 380.9 306 59.2
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.3e-103 379.8 249 68.3
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.9e-103 379.0 285 63.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.0e-102 376.7 274 65.7
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 5.7e-102 375.2 412 46.8
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-101 373.2 348 53.7
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 2.8e-101 372.9 283 59.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.1e-89 334.3 199 76.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 4.2e-89 332.4 200 76.0
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.5e-86 323.9 325 48.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-86 322.8 305 55.1
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-85 320.9 254 61.4
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-83 313.9 202 73.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-81 307.8 202 71.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.4e-81 304.7 222 67.1
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 8.3e-77 291.6 196 65.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.1e-76 289.7 404 40.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 7.0e-76 288.5 167 77.2
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.9e-73 280.4 296 44.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-65 253.8 165 71.5
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-57 227.3 144 72.9
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-57 227.3 144 72.9
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-57 227.3 144 72.9
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-57 226.9 193 59.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-56 223.8 144 72.2
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.3e-53 211.8 154 64.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.9e-45 186.8 115 73.9
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.9e-42 176.4 181 50.8
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.6e-42 175.3 179 50.3
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-41 174.9 96 79.2
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.2e-35 154.8 86 81.4
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 4.3e-33 146.4 108 63.0
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.2e-32 142.5 100 64.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.3e-29 134.8 84 71.4
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-24 116.3 75 70.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-22 109.8 62 75.8
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 2.0e-14 84.3 50 68.0
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 2.2e-13 80.9 48 79.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.6e-11 73.2 43 72.1
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 6.0e-11 72.8 66 56.1
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 2.5e-09 67.4 36 80.6
arahy.Tifrunner.gnm1.ann1.GV0XVU Arachis hypogaea HOM05D001147 ORTHO05D000823 4.5e-06 56.6 63 44.4
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-06 56.2 51 45.1


User provided reference genes

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